Analysis of interatomic Contacts of Structural Units in PDB entry:
2WOW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WOW entry

There are 4 chains in PDB entry 2WOW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	PRO 488
B	SER 2	ASP 489
C	SER -1	ASP 489
D	SER 2	ASN 491

There are 67 helices in PDB entry 2WOW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	27	Right-handed alpha
Helix 2	2	A	57	65	Right-handed alpha
Helix 3	3	A	68	77	Right-handed alpha
Helix 4	4	A	91	111	Right-handed alpha
Helix 5	5	A	177	182	Right-handed alpha
Helix 6	6	A	198	204	Right-handed alpha
Helix 7	7	A	206	211	Right-handed alpha
Helix 8	8	A	231	245	Right-handed alpha
Helix 9	9	A	291	295	Right-handed 310
Helix 10	10	A	334	341	Right-handed alpha
Helix 11	11	A	343	350	Right-handed alpha
Helix 12	12	A	378	384	Right-handed alpha
Helix 13	13	A	398	403	Right-handed 310
Helix 14	14	A	436	440	Right-handed 310
Helix 15	15	A	444	448	Right-handed 310
Helix 16	16	A	450	457	Right-handed alpha
Helix 17	17	A	464	470	Right-handed 310
Helix 18	18	B	21	27	Right-handed alpha
Helix 19	19	B	57	65	Right-handed alpha
Helix 20	20	B	68	76	Right-handed alpha
Helix 21	21	B	91	111	Right-handed alpha
Helix 22	22	B	177	182	Right-handed alpha
Helix 23	23	B	198	204	Right-handed alpha
Helix 24	24	B	206	211	Right-handed alpha
Helix 25	25	B	231	245	Right-handed alpha
Helix 26	26	B	291	295	Right-handed 310
Helix 27	27	B	334	341	Right-handed alpha
Helix 28	28	B	343	350	Right-handed alpha
Helix 29	29	B	378	386	Right-handed alpha
Helix 30	30	B	398	404	Right-handed alpha
Helix 31	31	B	434	439	Right-handed alpha
Helix 32	32	B	443	448	Right-handed 310
Helix 33	33	B	450	456	Right-handed alpha
Helix 34	34	B	464	470	Right-handed 310
Helix 35	35	C	21	27	Right-handed alpha
Helix 36	36	C	57	65	Right-handed alpha
Helix 37	37	C	68	76	Right-handed alpha
Helix 38	38	C	91	111	Right-handed alpha
Helix 39	39	C	177	182	Right-handed alpha
Helix 40	40	C	198	204	Right-handed alpha
Helix 41	41	C	206	211	Right-handed alpha
Helix 42	42	C	231	245	Right-handed alpha
Helix 43	43	C	291	295	Right-handed 310
Helix 44	44	C	334	341	Right-handed alpha
Helix 45	45	C	343	350	Right-handed alpha
Helix 46	46	C	378	386	Right-handed alpha
Helix 47	47	C	398	403	Right-handed 310
Helix 48	48	C	434	439	Right-handed alpha
Helix 49	49	C	450	457	Right-handed alpha
Helix 50	50	C	464	470	Right-handed 310
Helix 51	51	D	21	27	Right-handed alpha
Helix 52	52	D	57	65	Right-handed alpha
Helix 53	53	D	67	77	Right-handed alpha
Helix 54	54	D	91	111	Right-handed alpha
Helix 55	55	D	177	182	Right-handed alpha
Helix 56	56	D	198	204	Right-handed alpha
Helix 57	57	D	206	211	Right-handed alpha
Helix 58	58	D	231	245	Right-handed alpha
Helix 59	59	D	291	295	Right-handed 310
Helix 60	60	D	334	341	Right-handed alpha
Helix 61	61	D	343	350	Right-handed alpha
Helix 62	62	D	378	386	Right-handed alpha
Helix 63	63	D	398	403	Right-handed 310
Helix 64	64	D	434	439	Right-handed alpha
Helix 65	65	D	443	448	Right-handed 310
Helix 66	66	D	450	456	Right-handed alpha
Helix 67	67	D	464	470	Right-handed 310

There are 19 sheets in PDB entry 2WOW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	31	34	parallel
Strand 3	A	3	10	parallel
Strand 4	A	147	158	parallel
Strand 5	A	134	138	anti-parallel
Strand 6	A	129	131	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	31	34	parallel
Strand 3	A	3	10	parallel
Strand 4	A	147	158	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	217	221	parallel
Strand 3	A	191	194	parallel
Strand 4	A	280	283	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	275	278	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	411	418	anti-parallel
Strand 3	A	388	396	anti-parallel
Strand 4	A	476	479	anti-parallel
Strand 5	A	483	484	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	31	34	parallel
Strand 3	B	3	10	parallel
Strand 4	B	147	158	parallel
Strand 5	B	134	138	anti-parallel
Strand 6	B	129	131	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	31	34	parallel
Strand 3	B	3	10	parallel
Strand 4	B	147	158	parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	217	221	parallel
Strand 3	B	191	194	parallel
Strand 4	B	280	283	parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	270	anti-parallel
Strand 3	B	275	278	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	430	first strand
Strand 2	B	411	418	anti-parallel
Strand 3	B	388	396	anti-parallel
Strand 4	B	476	479	anti-parallel
Strand 5	B	483	484	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	123	first strand
Strand 2	C	31	34	parallel
Strand 3	C	4	10	parallel
Strand 4	C	147	158	parallel
Strand 5	C	134	138	anti-parallel
Strand 6	C	129	131	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	123	first strand
Strand 2	C	31	34	parallel
Strand 3	C	4	10	parallel
Strand 4	C	147	158	parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	250	first strand
Strand 2	C	217	220	parallel
Strand 3	C	191	194	parallel
Strand 4	C	280	283	parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	260	first strand
Strand 2	C	266	270	anti-parallel
Strand 3	C	275	278	anti-parallel

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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	430	first strand
Strand 2	C	411	418	anti-parallel
Strand 3	C	388	396	anti-parallel
Strand 4	C	476	479	anti-parallel
Strand 5	C	483	484	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	123	first strand
Strand 2	D	31	34	parallel
Strand 3	D	4	10	parallel
Strand 4	D	147	158	parallel
Strand 5	D	129	131	first strand
Strand 6	D	134	138	anti-parallel
Strand 7	D	147	158	anti-parallel
Strand 8	D	322	324	parallel
Strand 9	D	147	158	parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	250	first strand
Strand 2	D	217	220	parallel
Strand 3	D	191	194	parallel
Strand 4	D	280	283	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	260	first strand
Strand 2	D	266	270	anti-parallel
Strand 3	D	275	278	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	430	first strand
Strand 2	D	411	418	anti-parallel
Strand 3	D	388	396	anti-parallel
Strand 4	D	476	479	anti-parallel
Strand 5	D	483	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WOW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WOW