Analysis of interatomic Contacts of Structural Units in PDB entry:
2WOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WOY entry

There is 1 chain in PDB entry 2WOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1081THR 1413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2WOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1111 1115Right-handed 310
Helix 2
2
A
1120 1125Right-handed alpha
Helix 3
3
A
1143 1146Right-handed 310
Helix 4
4
A
1171 1182Right-handed alpha
Helix 5
5
A
1196 1204Right-handed alpha
Helix 6
6
A
1221 1226Right-handed 310
Helix 7
7
A
1342 1344Right-handed 310
Helix 8
8
A
1362 1367Right-handed alpha
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There are 8 sheets in PDB entry 2WOY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1082 1083first strand
Strand 2
A
1102 1109anti-parallel
Strand 3
A
1211 1219anti-parallel
Strand 4
A
1147 1149parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1082 1083first strand
Strand 2
A
1102 1109anti-parallel
Strand 3
A
1211 1219anti-parallel
Strand 4
A
1139 1141anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1147 1149first strand
Strand 2
A
1211 1219parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1164first strand
Strand 2
A
1189 1194anti-parallel
Strand 3
A
1128 1133anti-parallel
Strand 4
A
1228 1238anti-parallel
Strand 5
A
1241 1252anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1258 1262first strand
Strand 2
A
1282 1288anti-parallel
Strand 3
A
1377 1385anti-parallel
Strand 4
A
1314 1324anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1346 1351first strand
Strand 2
A
1356 1361anti-parallel
Strand 3
A
1303 1308anti-parallel
Strand 4
A
1396 1399anti-parallel
Strand 5
A
1402 1405anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1328 1329first strand
Strand 2
A
1335 1336anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1389 1393first strand
Strand 2
A
1409 1413anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il