Analysis of interatomic Contacts of Structural Units in PDB entry:
2WP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WP0 entry

There are 4 chains in PDB entry 2WP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 180
B
 MET 1LEU 180
C
 ASN 6PRO 91
D
 ASN 5PRO 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2WP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
17 23Right-handed alpha
Helix 3
3
A
32 46Right-handed alpha
Helix 4
4
A
58 70Right-handed alpha
Helix 5
5
A
95 107Right-handed alpha
Helix 6
6
A
123 128Right-handed alpha
Helix 7
7
A
154 175Right-handed alpha
Helix 8
8
B
4 15Right-handed alpha
Helix 9
9
B
17 23Right-handed alpha
Helix 10
10
B
32 46Right-handed alpha
Helix 11
11
B
58 70Right-handed alpha
Helix 12
12
B
95 107Right-handed alpha
Helix 13
13
B
123 128Right-handed alpha
Helix 14
14
B
154 175Right-handed alpha
Helix 15
15
C
6 9Right-handed 310
Helix 16
16
C
10 17Right-handed alpha
Helix 17
17
C
22 29Right-handed alpha
Helix 18
18
C
30 33Right-handed 310
Helix 19
19
C
51 62Right-handed alpha
Helix 20
20
C
64 72Right-handed alpha
Helix 21
21
D
5 17Right-handed alpha
Helix 22
22
D
22 29Right-handed alpha
Helix 23
23
D
30 33Right-handed 310
Helix 24
24
D
51 62Right-handed alpha
Helix 25
25
D
64 72Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2WP0. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
50 54parallel
Strand 3
A
111 115parallel
Strand 4
A
133 137parallel
Strand 5
A
146 147parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
B
2 3parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
50 54parallel
Strand 3
B
111 115parallel
Strand 4
B
133 137parallel
Strand 5
B
146 147parallel
Back to list of sheets
Back to top of page

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 35first strand
Strand 2
C
44 49anti-parallel
Strand 3
C
84 89parallel
Back to list of sheets
Back to top of page

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 35first strand
Strand 2
D
44 49anti-parallel
Strand 3
D
84 89parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il