Analysis of interatomic Contacts of Structural Units in PDB entry:
2WP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WP6 entry

There are 4 chains in PDB entry 2WP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	PRO 488
B	SER 2	ASP 489
C	SER 2	ASP 489
D	GLY -2	LYS 486

There are 63 helices in PDB entry 2WP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	27	Right-handed alpha
Helix 2	2	A	57	65	Right-handed alpha
Helix 3	3	A	67	76	Right-handed alpha
Helix 4	4	A	91	111	Right-handed alpha
Helix 5	5	A	177	182	Right-handed alpha
Helix 6	6	A	198	204	Right-handed alpha
Helix 7	7	A	206	211	Right-handed alpha
Helix 8	8	A	231	245	Right-handed alpha
Helix 9	9	A	334	341	Right-handed alpha
Helix 10	10	A	343	350	Right-handed alpha
Helix 11	11	A	378	386	Right-handed alpha
Helix 12	12	A	398	403	Right-handed 310
Helix 13	13	A	436	440	Right-handed 310
Helix 14	14	A	444	448	Right-handed 310
Helix 15	15	A	450	457	Right-handed alpha
Helix 16	16	A	464	470	Right-handed 310
Helix 17	17	B	21	27	Right-handed alpha
Helix 18	18	B	57	65	Right-handed alpha
Helix 19	19	B	67	76	Right-handed alpha
Helix 20	20	B	91	111	Right-handed alpha
Helix 21	21	B	177	182	Right-handed alpha
Helix 22	22	B	198	204	Right-handed alpha
Helix 23	23	B	206	211	Right-handed alpha
Helix 24	24	B	231	245	Right-handed alpha
Helix 25	25	B	334	341	Right-handed alpha
Helix 26	26	B	343	350	Right-handed alpha
Helix 27	27	B	378	383	Right-handed alpha
Helix 28	28	B	398	404	Right-handed alpha
Helix 29	29	B	434	439	Right-handed alpha
Helix 30	30	B	443	448	Right-handed 310
Helix 31	31	B	450	457	Right-handed alpha
Helix 32	32	B	464	470	Right-handed 310
Helix 33	33	C	21	27	Right-handed alpha
Helix 34	34	C	57	65	Right-handed alpha
Helix 35	35	C	67	76	Right-handed alpha
Helix 36	36	C	91	111	Right-handed alpha
Helix 37	37	C	177	182	Right-handed alpha
Helix 38	38	C	198	204	Right-handed alpha
Helix 39	39	C	206	211	Right-handed alpha
Helix 40	40	C	231	245	Right-handed alpha
Helix 41	41	C	334	341	Right-handed alpha
Helix 42	42	C	343	350	Right-handed alpha
Helix 43	43	C	378	386	Right-handed alpha
Helix 44	44	C	398	404	Right-handed alpha
Helix 45	45	C	443	448	Right-handed 310
Helix 46	46	C	450	457	Right-handed alpha
Helix 47	47	C	464	470	Right-handed 310
Helix 48	48	D	21	27	Right-handed alpha
Helix 49	49	D	57	65	Right-handed alpha
Helix 50	50	D	67	76	Right-handed alpha
Helix 51	51	D	91	111	Right-handed alpha
Helix 52	52	D	177	182	Right-handed alpha
Helix 53	53	D	198	204	Right-handed alpha
Helix 54	54	D	206	211	Right-handed alpha
Helix 55	55	D	231	245	Right-handed alpha
Helix 56	56	D	334	341	Right-handed alpha
Helix 57	57	D	343	350	Right-handed alpha
Helix 58	58	D	378	384	Right-handed alpha
Helix 59	59	D	399	404	Right-handed alpha
Helix 60	60	D	434	439	Right-handed alpha
Helix 61	61	D	444	448	Right-handed 310
Helix 62	62	D	450	457	Right-handed alpha
Helix 63	63	D	464	470	Right-handed 310

There are 19 sheets in PDB entry 2WP6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	31	34	parallel
Strand 3	A	3	10	parallel
Strand 4	A	147	158	parallel
Strand 5	A	134	138	anti-parallel
Strand 6	A	129	131	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	31	34	parallel
Strand 3	A	3	10	parallel
Strand 4	A	147	158	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	217	221	parallel
Strand 3	A	191	194	parallel
Strand 4	A	280	283	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	275	278	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	411	418	anti-parallel
Strand 3	A	388	396	anti-parallel
Strand 4	A	476	479	anti-parallel
Strand 5	A	483	484	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	31	34	parallel
Strand 3	B	3	10	parallel
Strand 4	B	149	158	parallel
Strand 5	B	134	137	anti-parallel
Strand 6	B	129	131	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	31	34	parallel
Strand 3	B	3	10	parallel
Strand 4	B	149	158	parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	217	221	parallel
Strand 3	B	191	194	parallel
Strand 4	B	280	283	parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	270	anti-parallel
Strand 3	B	275	278	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	430	first strand
Strand 2	B	411	418	anti-parallel
Strand 3	B	388	396	anti-parallel
Strand 4	B	476	479	anti-parallel
Strand 5	B	483	484	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	123	first strand
Strand 2	C	31	34	parallel
Strand 3	C	4	10	parallel
Strand 4	C	147	158	parallel
Strand 5	C	134	138	anti-parallel
Strand 6	C	129	131	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	123	first strand
Strand 2	C	31	34	parallel
Strand 3	C	4	10	parallel
Strand 4	C	147	158	parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	217	221	parallel
Strand 3	C	191	194	parallel
Strand 4	C	280	283	parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	260	first strand
Strand 2	C	266	270	anti-parallel
Strand 3	C	275	278	anti-parallel

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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	430	first strand
Strand 2	C	411	418	anti-parallel
Strand 3	C	388	396	anti-parallel
Strand 4	C	476	479	anti-parallel
Strand 5	C	483	484	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	123	first strand
Strand 2	D	31	34	parallel
Strand 3	D	4	10	parallel
Strand 4	D	147	158	parallel
Strand 5	D	129	131	first strand
Strand 6	D	134	138	anti-parallel
Strand 7	D	147	158	anti-parallel
Strand 8	D	322	324	parallel
Strand 9	D	147	158	parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	217	221	parallel
Strand 3	D	191	194	parallel
Strand 4	D	280	283	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	260	first strand
Strand 2	D	266	270	anti-parallel
Strand 3	D	275	278	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	430	first strand
Strand 2	D	411	418	anti-parallel
Strand 3	D	388	396	anti-parallel
Strand 4	D	476	479	anti-parallel
Strand 5	D	483	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WP6