Analysis of interatomic Contacts of Structural Units in PDB entry:
2WP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WP8 entry

There are 3 chains in PDB entry 2WP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 7	ARG 303
B	ARG 3	ARG 239
J	VAL 36	LYS 1001

There are 46 helices in PDB entry 2WP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	20	Right-handed alpha
Helix 2	2	A	107	115	Right-handed alpha
Helix 3	3	A	147	157	Right-handed alpha
Helix 4	4	A	224	231	Right-handed alpha
Helix 5	5	A	257	291	Right-handed alpha
Helix 6	6	A	293	298	Right-handed alpha
Helix 7	7	B	94	112	Right-handed alpha
Helix 8	8	B	143	150	Right-handed alpha
Helix 9	9	B	175	182	Right-handed alpha
Helix 10	10	B	207	216	Right-handed alpha
Helix 11	11	B	221	238	Right-handed alpha
Helix 12	12	J	54	58	Right-handed 310
Helix 13	13	J	91	103	Right-handed alpha
Helix 14	14	J	115	125	Right-handed alpha
Helix 15	15	J	125	138	Right-handed alpha
Helix 16	16	J	168	186	Right-handed alpha
Helix 17	17	J	187	189	Right-handed 310
Helix 18	18	J	218	224	Right-handed alpha
Helix 19	19	J	260	265	Right-handed alpha
Helix 20	20	J	322	326	Right-handed 310
Helix 21	21	J	335	339	Right-handed 310
Helix 22	22	J	366	383	Right-handed alpha
Helix 23	23	J	408	412	Right-handed 310
Helix 24	24	J	442	447	Right-handed 310
Helix 25	25	J	477	488	Right-handed alpha
Helix 26	26	J	496	501	Right-handed alpha
Helix 27	27	J	518	525	Right-handed alpha
Helix 28	28	J	526	531	Right-handed 310
Helix 29	29	J	572	577	Right-handed alpha
Helix 30	30	J	581	586	Right-handed alpha
Helix 31	31	J	654	663	Right-handed alpha
Helix 32	32	J	674	690	Right-handed alpha
Helix 33	33	J	698	703	Right-handed alpha
Helix 34	34	J	721	746	Right-handed alpha
Helix 35	35	J	759	762	Right-handed 310
Helix 36	36	J	763	775	Right-handed alpha
Helix 37	37	J	782	793	Right-handed alpha
Helix 38	38	J	800	811	Right-handed alpha
Helix 39	39	J	825	829	Right-handed 310
Helix 40	40	J	848	859	Right-handed alpha
Helix 41	41	J	868	872	Right-handed 310
Helix 42	42	J	873	894	Right-handed alpha
Helix 43	43	J	896	903	Right-handed alpha
Helix 44	44	J	905	910	Right-handed alpha
Helix 45	45	J	940	944	Right-handed 310
Helix 46	46	J	947	951	Right-handed 310

There are 18 sheets in PDB entry 2WP8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, JA, JB, JC, JD, JE, JF, JG, JH, JI, JJ, JK,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	55	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	77	81	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	55	65	anti-parallel
Strand 4	A	130	142	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	185	186	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	235	239	anti-parallel
Strand 4	A	244	250	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	235	239	anti-parallel
Strand 4	A	244	250	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	J	599	601	anti-parallel
Strand 3	J	594	596	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	40	43	anti-parallel
Strand 3	B	48	57	anti-parallel
Strand 4	B	120	130	anti-parallel
Strand 5	B	70	78	parallel

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There are 5 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	148	first strand
Strand 2	J	110	114	parallel
Strand 3	J	86	90	parallel
Strand 4	J	191	196	parallel
Strand 5	J	215	217	parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	315	320	first strand
Strand 2	J	390	397	anti-parallel

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There are 3 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	402	403	first strand
Strand 2	J	449	455	anti-parallel
Strand 3	J	464	470	anti-parallel

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There are 2 strands in JD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	420	424	first strand
Strand 2	J	434	438	anti-parallel

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There are 5 strands in JE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	532	533	first strand
Strand 2	J	636	647	parallel
Strand 3	J	620	630	anti-parallel
Strand 4	J	564	571	anti-parallel
Strand 5	J	552	553	anti-parallel

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There are 5 strands in JF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	532	533	first strand
Strand 2	J	636	647	parallel
Strand 3	J	620	630	anti-parallel
Strand 4	J	564	571	anti-parallel
Strand 5	J	557	558	anti-parallel

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There are 2 strands in JG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	540	543	first strand
Strand 2	J	650	653	parallel

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There are 2 strands in JH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	751	754	first strand
Strand 2	J	817	820	anti-parallel

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There are 3 strands in JI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	913	914	first strand
Strand 2	J	981	983	anti-parallel
Strand 3	J	998	1000	anti-parallel

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There are 2 strands in JJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	918	920	first strand
Strand 2	J	927	928	anti-parallel

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There are 3 strands in JK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	952	954	first strand
Strand 2	J	959	962	anti-parallel
Strand 3	J	971	974	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WP8