Analysis of interatomic Contacts of Structural Units in PDB entry:
2WPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WPD entry

There are 19 chains in PDB entry 2WPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 26	PHE 510
B	ALA 25	THR 509
C	ASN 26	PHE 510
D	SER 6	ALA 475
E	SER 6	ASN 478
F	THR 7	ASN 478
G	ALA 1	GLY 278
H	SER 7	LYS 138
I	SER 1	ILE 59
J	MET 1	VAL 76
K	MET 1	VAL 76
L	MET 1	VAL 76
M	MET 1	VAL 76
N	MET 1	VAL 76
O	MET 1	VAL 76
P	MET 1	VAL 76
Q	MET 1	VAL 76
R	MET 1	VAL 76
S	MET 1	VAL 76

There are168 helices in PDB entry 2WPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	A2	A	152	157	Right-handed alpha
Helix 2	A3	A	177	187	Right-handed alpha
Helix 3	A4	A	211	225	Right-handed alpha
Helix 4	A5	A	227	229	Right-handed 310
Helix 5	A6	A	241	262	Right-handed alpha
Helix 6	A7	A	272	287	Right-handed alpha
Helix 7	A8	A	293	295	Right-handed 310
Helix 8	A9	A	299	309	Right-handed alpha
Helix 9	A10	A	316	318	Right-handed 310
Helix 10	A11	A	338	348	Right-handed alpha
Helix 11	A12	A	355	361	Right-handed alpha
Helix 12	A14	A	377	380	Right-handed 310
Helix 13	A15	A	382	387	Right-handed alpha
Helix 14	A16	A	391	402	Right-handed alpha
Helix 15	A17	A	404	408	Right-handed 310
Helix 16	A18	A	413	431	Right-handed alpha
Helix 17	A19	A	439	452	Right-handed alpha
Helix 18	A21	A	465	477	Right-handed alpha
Helix 19	A22	A	478	488	Right-handed alpha
Helix 20	A23	A	492	510	Right-handed alpha
Helix 21	B1	B	80	84	Right-handed 310
Helix 22	B2	B	154	159	Right-handed alpha
Helix 23	B3	B	177	193	Right-handed alpha
Helix 24	B4	B	211	225	Right-handed alpha
Helix 25	B5	B	227	229	Right-handed 310
Helix 26	B6	B	241	262	Right-handed alpha
Helix 27	B7	B	272	287	Right-handed alpha
Helix 28	B8	B	293	295	Right-handed 310
Helix 29	B9	B	299	309	Right-handed alpha
Helix 30	B10	B	316	318	Right-handed 310
Helix 31	B11	B	338	346	Right-handed alpha
Helix 32	B12	B	355	361	Right-handed alpha
Helix 33	B14	B	378	380	Right-handed 310
Helix 34	B15	B	382	389	Right-handed alpha
Helix 35	B16	B	391	404	Right-handed alpha
Helix 36	B18	B	413	431	Right-handed alpha
Helix 37	B19	B	439	452	Right-handed alpha
Helix 38	B20	B	459	463	Right-handed 310
Helix 39	B21	B	465	477	Right-handed alpha
Helix 40	B22	B	478	488	Right-handed alpha
Helix 41	B23	B	492	509	Right-handed alpha
Helix 42	C2	C	152	158	Right-handed alpha
Helix 43	C3	C	177	193	Right-handed alpha
Helix 44	C4	C	211	225	Right-handed alpha
Helix 45	C6	C	241	262	Right-handed alpha
Helix 46	C7	C	272	287	Right-handed alpha
Helix 47	C9	C	299	309	Right-handed alpha
Helix 48	C11	C	338	346	Right-handed alpha
Helix 49	C12	C	355	361	Right-handed alpha
Helix 50	C13	C	369	371	Right-handed 310
Helix 51	C14	C	378	380	Right-handed 310
Helix 52	C15	C	382	389	Right-handed alpha
Helix 53	C16	C	391	406	Right-handed alpha
Helix 54	C18	C	413	430	Right-handed alpha
Helix 55	C19	C	439	452	Right-handed alpha
Helix 56	C20	C	459	463	Right-handed 310
Helix 57	C21	C	465	477	Right-handed alpha
Helix 58	C22	C	478	488	Right-handed alpha
Helix 59	C23	C	492	509	Right-handed alpha
Helix 60	D1	D	89	91	Right-handed 310
Helix 61	D2	D	124	126	Right-handed 310
Helix 62	D3	D	139	144	Right-handed alpha
Helix 63	D4	D	163	175	Right-handed alpha
Helix 64	D5	D	191	204	Right-handed alpha
Helix 65	D6	D	226	246	Right-handed alpha
Helix 66	D7	D	258	269	Right-handed alpha
Helix 67	D8	D	270	272	Right-handed 310
Helix 68	D10	D	285	295	Right-handed alpha
Helix 69	D11	D	313	315	Right-handed 310
Helix 70	D12	D	320	325	Right-handed alpha
Helix 71	D13	D	326	328	Right-handed 310
Helix 72	D14	D	337	341	Right-handed alpha
Helix 73	D15	D	360	363	Right-handed alpha
Helix 74	D16	D	365	384	Right-handed alpha
Helix 75	D17	D	385	387	Right-handed 310
Helix 76	D18	D	398	414	Right-handed alpha
Helix 77	D20	D	421	425	Right-handed alpha
Helix 78	D21	D	434	446	Right-handed alpha
Helix 79	D22	D	454	456	Right-handed 310
Helix 80	D23	D	463	474	Right-handed alpha
Helix 81	E1	E	89	91	Right-handed 310
Helix 82	E2	E	124	126	Right-handed 310
Helix 83	E3	E	139	144	Right-handed alpha
Helix 84	E4	E	163	178	Right-handed alpha
Helix 85	E5	E	191	204	Right-handed alpha
Helix 86	E6	E	226	246	Right-handed alpha
Helix 87	E7	E	258	272	Right-handed alpha
Helix 88	E9	E	278	280	Right-handed 310
Helix 89	E10	E	284	294	Right-handed alpha
Helix 90	E11	E	313	315	Right-handed 310
Helix 91	E12	E	320	327	Right-handed alpha
Helix 92	E14	E	337	342	Right-handed alpha
Helix 93	E16	E	365	384	Right-handed alpha
Helix 94	E18	E	398	414	Right-handed alpha
Helix 95	E19	E	418	422	Right-handed 310
Helix 96	E21	E	434	446	Right-handed alpha
Helix 97	E22	E	454	456	Right-handed 310
Helix 98	E23	E	463	477	Right-handed alpha
Helix 99	F1	F	89	91	Right-handed 310
Helix 100	F2	F	124	126	Right-handed 310
Helix 101	F3	F	139	143	Right-handed alpha
Helix 102	F4	F	163	175	Right-handed alpha
Helix 103	F5	F	191	204	Right-handed alpha
Helix 104	F6	F	226	246	Right-handed alpha
Helix 105	F7	F	258	272	Right-handed alpha
Helix 106	F10	F	285	295	Right-handed alpha
Helix 107	F11	F	313	315	Right-handed 310
Helix 108	F12	F	320	324	Right-handed alpha
Helix 109	F13	F	326	328	Right-handed 310
Helix 110	F14	F	337	341	Right-handed alpha
Helix 111	F16	F	365	391	Right-handed alpha
Helix 112	F18	F	398	414	Right-handed alpha
Helix 113	F19	F	419	421	Right-handed 310
Helix 114	F20	F	422	425	Right-handed alpha
Helix 115	F21	F	434	446	Right-handed alpha
Helix 116	F22	F	454	457	Right-handed 310
Helix 117	F23	F	463	476	Right-handed alpha
Helix 118	G1	G	2	55	Right-handed alpha
Helix 119	G2	G	87	102	Right-handed alpha
Helix 120	G3	G	112	121	Right-handed alpha
Helix 121	G4	G	139	153	Right-handed alpha
Helix 122	G5	G	184	190	Right-handed alpha
Helix 123	G6	G	204	275	Right-handed alpha
Helix 124	H1	H	98	115	Right-handed alpha
Helix 125	H2	H	116	137	Right-handed alpha
Helix 126	I1	I	9	23	Right-handed alpha
Helix 127	I2	I	31	35	Right-handed alpha
Helix 128	I2	I	36	38	Right-handed 310
Helix 129	J1	J	2	15	Right-handed alpha
Helix 130	J2	J	16	20	Right-handed 310
Helix 131	J3	J	21	38	Right-handed alpha
Helix 132	J4	J	46	72	Right-handed alpha
Helix 133	K1	K	2	15	Right-handed alpha
Helix 134	K2	K	16	20	Right-handed 310
Helix 135	K3	K	21	38	Right-handed alpha
Helix 136	K4	K	46	72	Right-handed alpha
Helix 137	L1	L	2	15	Right-handed alpha
Helix 138	L2	L	16	20	Right-handed 310
Helix 139	L3	L	21	38	Right-handed alpha
Helix 140	L4	L	46	72	Right-handed alpha
Helix 141	M1	M	2	15	Right-handed alpha
Helix 142	M2	M	16	20	Right-handed 310
Helix 143	M3	M	21	38	Right-handed alpha
Helix 144	M4	M	46	72	Right-handed alpha
Helix 145	N1	N	2	15	Right-handed alpha
Helix 146	N2	N	16	20	Right-handed 310
Helix 147	N3	N	21	38	Right-handed alpha
Helix 148	N4	N	46	72	Right-handed alpha
Helix 149	O1	O	2	15	Right-handed alpha
Helix 150	O2	O	16	20	Right-handed 310
Helix 151	O3	O	21	38	Right-handed alpha
Helix 152	O4	O	46	72	Right-handed alpha
Helix 153	P1	P	2	15	Right-handed alpha
Helix 154	P2	P	16	20	Right-handed 310
Helix 155	P3	P	21	38	Right-handed alpha
Helix 156	P4	P	46	72	Right-handed alpha
Helix 157	Q1	Q	2	15	Right-handed alpha
Helix 158	Q2	Q	16	20	Right-handed 310
Helix 159	Q3	Q	21	38	Right-handed alpha
Helix 160	Q4	Q	46	72	Right-handed alpha
Helix 161	R1	R	2	15	Right-handed alpha
Helix 162	R2	R	16	20	Right-handed 310
Helix 163	R3	R	21	38	Right-handed alpha
Helix 164	R4	R	46	72	Right-handed alpha
Helix 165	S1	S	2	15	Right-handed alpha
Helix 166	S2	S	16	20	Right-handed 310
Helix 167	S3	S	21	38	Right-handed alpha
Helix 168	S4	S	46	72	Right-handed alpha

There are 30 sheets in PDB entry 2WPD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE, GA, GB, HA, HB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	42	43	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	90	96	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	129	130	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	231	235	parallel
Strand 3	A	202	207	parallel
Strand 4	A	266	271	parallel
Strand 5	A	323	327	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	42	43	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	90	96	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	129	130	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	231	235	parallel
Strand 3	B	202	207	parallel
Strand 4	B	266	271	parallel
Strand 5	B	323	325	parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	42	43	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	57	first strand
Strand 2	C	90	96	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	129	130	anti-parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	231	235	parallel
Strand 3	C	202	207	parallel
Strand 4	C	266	271	parallel
Strand 5	C	323	325	parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	58	62	anti-parallel
Strand 4	D	48	53	anti-parallel
Strand 5	D	36	38	anti-parallel
Strand 6	D	77	78	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	114	116	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	215	218	parallel
Strand 3	D	182	185	parallel
Strand 4	D	251	255	parallel
Strand 5	D	304	308	parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	147	148	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	58	63	anti-parallel
Strand 4	E	46	52	anti-parallel
Strand 5	E	36	39	anti-parallel
Strand 6	E	77	78	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	87	first strand
Strand 2	E	113	116	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	147	148	anti-parallel

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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	217	first strand
Strand 2	E	182	185	parallel
Strand 3	E	251	255	parallel
Strand 4	E	304	308	parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	354	355	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	20	24	anti-parallel
Strand 3	F	58	63	anti-parallel
Strand 4	F	46	52	anti-parallel
Strand 5	F	36	39	anti-parallel
Strand 6	F	77	78	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	87	first strand
Strand 2	F	113	116	anti-parallel

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There are 5 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	97	first strand
Strand 2	F	215	219	parallel
Strand 3	F	182	185	parallel
Strand 4	F	251	255	parallel
Strand 5	F	304	308	parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	147	148	anti-parallel

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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	331	332	first strand
Strand 2	F	354	355	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	76	first strand
Strand 2	G	162	171	parallel
Strand 3	G	174	182	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	131	first strand
Strand 2	I	43	46	anti-parallel
Strand 3	I	57	58	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	82	86	parallel
Strand 3	H	75	78	anti-parallel
Strand 4	H	49	50	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	57	60	anti-parallel
Strand 3	H	66	70	anti-parallel
Strand 4	H	90	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WPD