Analysis of interatomic Contacts of Structural Units in PDB entry:
2WPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WPF entry

There are 4 chains in PDB entry 2WPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER -1PRO 488
B
SER 2PRO 488
C
LYS 3ASP 489
D
GLY -2PRO 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 2WPF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
21 27Right-handed alpha
Helix 2
2
A
57 65Right-handed alpha
Helix 3
3
A
67 77Right-handed alpha
Helix 4
4
A
91 111Right-handed alpha
Helix 5
5
A
178 182Right-handed alpha
Helix 6
6
A
198 204Right-handed alpha
Helix 7
7
A
206 211Right-handed alpha
Helix 8
8
A
231 245Right-handed alpha
Helix 9
9
A
291 295Right-handed 310
Helix 10
10
A
334 341Right-handed alpha
Helix 11
11
A
343 350Right-handed alpha
Helix 12
12
A
378 386Right-handed alpha
Helix 13
13
A
399 404Right-handed alpha
Helix 14
14
A
434 439Right-handed alpha
Helix 15
15
A
450 457Right-handed alpha
Helix 16
16
A
464 470Right-handed 310
Helix 17
17
B
21 27Right-handed alpha
Helix 18
18
B
57 65Right-handed alpha
Helix 19
19
B
68 76Right-handed alpha
Helix 20
20
B
91 111Right-handed alpha
Helix 21
21
B
177 182Right-handed alpha
Helix 22
22
B
198 204Right-handed alpha
Helix 23
23
B
206 211Right-handed alpha
Helix 24
24
B
231 245Right-handed alpha
Helix 25
25
B
291 295Right-handed 310
Helix 26
26
B
334 341Right-handed alpha
Helix 27
27
B
343 350Right-handed alpha
Helix 28
28
B
378 383Right-handed alpha
Helix 29
29
B
398 404Right-handed alpha
Helix 30
30
B
443 448Right-handed 310
Helix 31
31
B
450 456Right-handed alpha
Helix 32
32
B
464 470Right-handed 310
Helix 33
33
C
21 27Right-handed alpha
Helix 34
34
C
57 65Right-handed alpha
Helix 35
35
C
67 77Right-handed alpha
Helix 36
36
C
91 111Right-handed alpha
Helix 37
37
C
177 182Right-handed alpha
Helix 38
38
C
198 204Right-handed alpha
Helix 39
39
C
206 211Right-handed alpha
Helix 40
40
C
231 245Right-handed alpha
Helix 41
41
C
291 295Right-handed 310
Helix 42
42
C
334 341Right-handed alpha
Helix 43
43
C
343 350Right-handed alpha
Helix 44
44
C
378 386Right-handed alpha
Helix 45
45
C
398 404Right-handed alpha
Helix 46
46
C
434 439Right-handed alpha
Helix 47
47
C
443 448Right-handed 310
Helix 48
48
C
450 456Right-handed alpha
Helix 49
49
C
464 470Right-handed 310
Helix 50
50
D
21 27Right-handed alpha
Helix 51
51
D
57 65Right-handed alpha
Helix 52
52
D
67 76Right-handed alpha
Helix 53
53
D
91 111Right-handed alpha
Helix 54
54
D
177 182Right-handed alpha
Helix 55
55
D
198 204Right-handed alpha
Helix 56
56
D
206 211Right-handed alpha
Helix 57
57
D
231 245Right-handed alpha
Helix 58
58
D
334 341Right-handed alpha
Helix 59
59
D
343 350Right-handed alpha
Helix 60
60
D
378 386Right-handed alpha
Helix 61
61
D
398 404Right-handed alpha
Helix 62
62
D
450 457Right-handed alpha
Helix 63
63
D
464 470Right-handed 310
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There are 19 sheets in PDB entry 2WPF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 123first strand
Strand 2
A
31 34parallel
Strand 3
A
3 10parallel
Strand 4
A
147 158parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
129 131anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 123first strand
Strand 2
A
31 34parallel
Strand 3
A
3 10parallel
Strand 4
A
147 158parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 177first strand
Strand 2
A
280 283parallel
Strand 3
A
191 194parallel
Strand 4
A
217 221parallel
Strand 5
A
248 251parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
275 278anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
428 430first strand
Strand 2
A
411 418anti-parallel
Strand 3
A
388 396anti-parallel
Strand 4
A
476 479anti-parallel
Strand 5
A
483 484anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
121 123first strand
Strand 2
B
31 34parallel
Strand 3
B
4 10parallel
Strand 4
B
147 158parallel
Strand 5
B
134 138anti-parallel
Strand 6
B
129 131anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
121 123first strand
Strand 2
B
31 34parallel
Strand 3
B
4 10parallel
Strand 4
B
147 158parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
248 251first strand
Strand 2
B
217 221parallel
Strand 3
B
191 194parallel
Strand 4
B
280 283parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
255 260first strand
Strand 2
B
266 270anti-parallel
Strand 3
B
275 278anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
428 430first strand
Strand 2
B
411 418anti-parallel
Strand 3
B
388 396anti-parallel
Strand 4
B
476 479anti-parallel
Strand 5
B
483 484anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
121 123first strand
Strand 2
C
31 34parallel
Strand 3
C
4 10parallel
Strand 4
C
147 158parallel
Strand 5
C
134 138anti-parallel
Strand 6
C
129 131anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
121 123first strand
Strand 2
C
31 34parallel
Strand 3
C
4 10parallel
Strand 4
C
147 158parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
248 251first strand
Strand 2
C
217 221parallel
Strand 3
C
191 194parallel
Strand 4
C
280 283parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
255 260first strand
Strand 2
C
266 270anti-parallel
Strand 3
C
275 278anti-parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
428 430first strand
Strand 2
C
411 418anti-parallel
Strand 3
C
388 396anti-parallel
Strand 4
C
476 479anti-parallel
Strand 5
C
483 484anti-parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
121 123first strand
Strand 2
D
31 34parallel
Strand 3
D
4 10parallel
Strand 4
D
147 158parallel
Strand 5
D
129 131first strand
Strand 6
D
134 138anti-parallel
Strand 7
D
147 158anti-parallel
Strand 8
D
322 324parallel
Strand 9
D
147 158parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
248 251first strand
Strand 2
D
217 221parallel
Strand 3
D
191 194parallel
Strand 4
D
280 283parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
255 260first strand
Strand 2
D
266 270anti-parallel
Strand 3
D
275 278anti-parallel
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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
428 430first strand
Strand 2
D
411 418anti-parallel
Strand 3
D
388 396anti-parallel
Strand 4
D
476 479anti-parallel
Strand 5
D
483 484anti-parallel
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