Analysis of interatomic Contacts of Structural Units in PDB entry:
2WQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WQD entry

There is 1 chain in PDB entry 2WQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2WQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 62Right-handed alpha
Helix 2
2
A
72 82Right-handed alpha
Helix 3
3
A
84 99Right-handed alpha
Helix 4
4
A
101 119Right-handed alpha
Helix 5
5
A
122 144Right-handed alpha
Helix 6
6
A
166 171Right-handed alpha
Helix 7
7
A
190 199Right-handed alpha
Helix 8
8
A
209 214Right-handed alpha
Helix 9
9
A
234 257Right-handed alpha
Helix 10
10
A
279 283Right-handed 310
Helix 11
11
A
299 304Right-handed alpha
Helix 12
12
A
311 326Right-handed alpha
Helix 13
13
A
360 366Right-handed alpha
Helix 14
14
A
368 383Right-handed alpha
Helix 15
15
A
397 418Right-handed alpha
Helix 16
16
A
434 440Right-handed alpha
Helix 17
17
A
440 448Right-handed alpha
Helix 18
18
A
455 464Right-handed alpha
Helix 19
19
A
469 476Right-handed 310
Helix 20
20
A
480 497Right-handed alpha
Helix 21
21
A
513 518Right-handed alpha
Helix 22
22
A
528 530Right-handed 310
Helix 23
23
A
531 540Right-handed alpha
Helix 24
24
A
543 555Right-handed alpha
Helix 25
25
A
559 569Right-handed alpha
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There are 4 sheets in PDB entry 2WQD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
229 231anti-parallel
Strand 3
A
219 222anti-parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
158 161parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
203 204anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
524 527parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
331 334parallel
Strand 3
A
388 391parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il