Analysis of interatomic Contacts of Structural Units in PDB entry:
2WQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WQE entry

There is 1 chain in PDB entry 2WQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 127SER 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2WQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 131Right-handed 310
Helix 2
2
A
166 172Right-handed alpha
Helix 3
3
A
174 187Right-handed alpha
Helix 4
4
A
217 225Right-handed alpha
Helix 5
5
A
229 249Right-handed alpha
Helix 6
6
A
258 260Right-handed 310
Helix 7
7
A
292 296Right-handed 310
Helix 8
8
A
297 301Right-handed 310
Helix 9
9
A
309 315Right-handed alpha
Helix 10
10
A
317 324Right-handed alpha
Helix 11
11
A
333 343Right-handed alpha
Helix 12
12
A
356 364Right-handed alpha
Helix 13
13
A
367 371Right-handed 310
Helix 14
14
A
373 379Right-handed alpha
Helix 15
15
A
380 387Right-handed alpha
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There are 2 sheets in PDB entry 2WQE. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
200 201anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il