Analysis of interatomic Contacts of Structural Units in PDB entry:
2WQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WQJ entry

There are 28 chains in PDB entry 2WQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 349LEU 380
B
 THR 354LEU 380
C
 GLY 349VAL 381
D
 ASP 353LEU 380
E
 ASP 353LEU 380
F
 GLU 352LEU 380
G
 ASP 353LEU 380
H
 ASP 353LEU 380
I
 ASP 353PRO 382
J
 ASP 353LEU 380
K
 ASP 351LEU 380
L
 THR 354LEU 380
M
 ASP 353LEU 380
N
 GLU 352LEU 380
O
 ASP 353LEU 380
P
 ASP 353LEU 380
Q
 GLU 352LEU 380
R
 GLU 352LEU 380
S
 ASP 353LEU 380
T
 ASP 353LEU 380
U
 ASP 353LEU 380
V
 ASP 353LEU 380
W
 ASP 353LEU 380
X
 ASP 353VAL 381
Y
 GLU 352LEU 377
Z
 ASP 353GLN 383
1
 THR 354LEU 380
2
 ASP 353LEU 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2WQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
362 379Right-handed alpha
Helix 2
2
B
362 379Right-handed alpha
Helix 3
3
C
362 380Right-handed alpha
Helix 4
4
D
362 379Right-handed alpha
Helix 5
5
E
362 380Right-handed alpha
Helix 6
6
F
362 379Right-handed alpha
Helix 7
7
G
362 380Right-handed alpha
Helix 8
8
H
362 380Right-handed alpha
Helix 9
9
I
362 381Right-handed alpha
Helix 10
10
J
362 379Right-handed alpha
Helix 11
11
K
362 380Right-handed alpha
Helix 12
12
L
362 379Right-handed alpha
Helix 13
13
M
362 380Right-handed alpha
Helix 14
14
N
362 379Right-handed alpha
Helix 15
15
O
362 379Right-handed alpha
Helix 16
16
P
362 380Right-handed alpha
Helix 17
17
Q
362 379Right-handed alpha
Helix 18
18
R
362 379Right-handed alpha
Helix 19
19
S
362 379Right-handed alpha
Helix 20
20
T
362 379Right-handed alpha
Helix 21
21
U
362 380Right-handed alpha
Helix 22
22
V
362 376Right-handed alpha
Helix 23
23
W
362 379Right-handed alpha
Helix 24
24
X
362 380Right-handed alpha
Helix 25
25
Y
362 376Right-handed alpha
Helix 26
26
Z
362 379Right-handed alpha
Helix 27
27
1
362 378Right-handed alpha
Helix 28
28
2
362 377Right-handed alpha
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There are 14 sheets in PDB entry 2WQJ. Click on sheet of interest to get list of strands forming it: AA, CA, EA, GA, IA, KA, MA, OA, QA, SA, UA, WA, YA, 1A,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
B
355 359anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
355 359first strand
Strand 2
D
355 359anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
355 359first strand
Strand 2
F
355 359anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
355 359first strand
Strand 2
H
355 359anti-parallel
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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
355 359first strand
Strand 2
J
355 359anti-parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
355 359first strand
Strand 2
L
355 359anti-parallel
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There are 2 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
355 359first strand
Strand 2
N
355 359anti-parallel
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There are 2 strands in OA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
355 359first strand
Strand 2
P
355 359anti-parallel
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There are 2 strands in QA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
355 359first strand
Strand 2
R
355 359anti-parallel
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There are 2 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
355 359first strand
Strand 2
T
355 359anti-parallel
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There are 2 strands in UA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
355 359first strand
Strand 2
V
355 359anti-parallel
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There are 2 strands in WA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
355 359first strand
Strand 2
X
355 359anti-parallel
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There are 2 strands in YA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
355 359first strand
Strand 2
Z
355 359anti-parallel
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There are 2 strands in 1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
355 359first strand
Strand 2
2
355 359anti-parallel
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