Analysis of interatomic Contacts of Structural Units in PDB entry:
2WQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WQP entry

There is 1 chain in PDB entry 2WQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLU 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2WQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 47Right-handed alpha
Helix 2
2
A
58 63Right-handed alpha
Helix 3
3
A
64 70Right-handed 310
Helix 4
4
A
78 87Right-handed alpha
Helix 5
5
A
89 103Right-handed alpha
Helix 6
6
A
113 124Right-handed alpha
Helix 7
7
A
137 146Right-handed alpha
Helix 8
8
A
159 173Right-handed alpha
Helix 9
9
A
189 193Right-handed 310
Helix 10
10
A
198 205Right-handed alpha
Helix 11
11
A
247 251Right-handed 310
Helix 12
12
A
253 262Right-handed alpha
Helix 13
13
A
264 271Right-handed alpha
Helix 14
14
A
282 290Right-handed alpha
Helix 15
15
A
322 329Right-handed 310
Helix 16
16
A
344 347Right-handed 310
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There are 4 sheets in PDB entry 2WQP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
13 14anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
51 56parallel
Strand 3
A
21 25parallel
Strand 4
A
232 236parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
151 154parallel
Strand 3
A
177 180parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
310 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il