Analysis of interatomic Contacts of Structural Units in PDB entry:
2WQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WQQ entry

There is 1 chain in PDB entry 2WQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ILE 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2WQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
17 21Right-handed 310
Helix 3
3
A
32 36Right-handed 310
Helix 4
4
A
51 53Right-handed 310
Helix 5
5
A
54 68Right-handed alpha
Helix 6
6
A
88 94Right-handed alpha
Helix 7
7
A
94 99Right-handed alpha
Helix 8
8
A
108 111Right-handed 310
Helix 9
9
A
112 127Right-handed alpha
Helix 10
10
A
134 143Right-handed alpha
Helix 11
11
A
168 175Right-handed alpha
Helix 12
12
A
176 179Right-handed 310
Helix 13
13
A
189 205Right-handed alpha
Helix 14
14
A
215 220Right-handed 310
Helix 15
15
A
254 258Right-handed 310
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There are 2 sheets in PDB entry 2WQQ. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
44 50parallel
Strand 3
A
25 30parallel
Strand 4
A
3 6parallel
Strand 5
A
147 150parallel
Strand 6
A
207 210parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
234 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il