Analysis of interatomic Contacts of Structural Units in PDB entry:
2WTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WTM entry

There are 4 chains in PDB entry 2WTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LYS 248
B
 SER -2LYS 248
C
 SER -2ALA 247
D
 SER -2LYS 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2WTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 52Right-handed alpha
Helix 2
2
A
70 74Right-handed 310
Helix 3
3
A
75 91Right-handed alpha
Helix 4
4
A
109 118Right-handed alpha
Helix 5
5
A
133 140Right-handed alpha
Helix 6
6
A
168 174Right-handed alpha
Helix 7
7
A
177 185Right-handed alpha
Helix 8
8
A
201 212Right-handed alpha
Helix 9
9
A
230 247Right-handed alpha
Helix 10
10
B
39 52Right-handed alpha
Helix 11
11
B
75 92Right-handed alpha
Helix 12
12
B
109 118Right-handed alpha
Helix 13
13
B
133 140Right-handed alpha
Helix 14
14
B
168 174Right-handed alpha
Helix 15
15
B
177 185Right-handed alpha
Helix 16
16
B
201 212Right-handed alpha
Helix 17
17
B
230 247Right-handed alpha
Helix 18
18
C
39 52Right-handed alpha
Helix 19
19
C
70 74Right-handed 310
Helix 20
20
C
75 91Right-handed alpha
Helix 21
21
C
109 118Right-handed alpha
Helix 22
22
C
133 140Right-handed alpha
Helix 23
23
C
168 174Right-handed alpha
Helix 24
24
C
177 185Right-handed alpha
Helix 25
25
C
201 212Right-handed alpha
Helix 26
26
C
230 247Right-handed alpha
Helix 27
27
D
39 52Right-handed alpha
Helix 28
28
D
75 91Right-handed alpha
Helix 29
29
D
109 118Right-handed alpha
Helix 30
30
D
133 140Right-handed alpha
Helix 31
31
D
168 174Right-handed alpha
Helix 32
32
D
177 185Right-handed alpha
Helix 33
33
D
201 212Right-handed alpha
Helix 34
34
D
230 248Right-handed alpha
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There are 12 sheets in PDB entry 2WTM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, CA, CB, A, DB, C,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 4first strand
Strand 2
A
9 15anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
24 30parallel
Strand 5
A
96 102parallel
Strand 6
A
122 125parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
164 165anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
215 219parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 4first strand
Strand 2
B
9 15anti-parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
24 30parallel
Strand 5
B
96 102parallel
Strand 6
B
122 125parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
C
157 158parallel
Strand 3
C
164 165anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
164 165anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 193first strand
Strand 2
B
215 219parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 4first strand
Strand 2
C
9 15anti-parallel
Strand 3
C
55 59anti-parallel
Strand 4
C
24 30parallel
Strand 5
C
96 102parallel
Strand 6
C
122 125parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 193first strand
Strand 2
C
215 219parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1 4first strand
Strand 2
D
9 15anti-parallel
Strand 3
D
55 59anti-parallel
Strand 4
D
24 30parallel
Strand 5
D
96 102parallel
Strand 6
D
122 125parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 158first strand
Strand 2
D
164 165anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
189 193first strand
Strand 2
D
215 219parallel
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