Analysis of interatomic Contacts of Structural Units in PDB entry:
2WV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WV5 entry

There are 8 chains in PDB entry 2WV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	VAL 206
B	ASP 7	VAL 206
C	ASP 7	VAL 206
D	ASP 7	VAL 206
E	ALA 2	PHE 10
F	ALA 2	PHE 10
G	ALA 2	PHE 10
H	ALA 2	PHE 10

There are 20 helices in PDB entry 2WV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	15	Right-handed alpha
Helix 2	2	A	46	50	Right-handed 310
Helix 3	3	A	63	65	Right-handed 310
Helix 4	4	A	99	102	Right-handed 310
Helix 5	5	A	195	206	Right-handed alpha
Helix 6	6	B	7	15	Right-handed alpha
Helix 7	7	B	46	50	Right-handed 310
Helix 8	8	B	63	65	Right-handed 310
Helix 9	9	B	99	103	Right-handed 310
Helix 10	10	B	195	204	Right-handed alpha
Helix 11	11	C	7	15	Right-handed alpha
Helix 12	12	C	46	50	Right-handed 310
Helix 13	13	C	63	65	Right-handed 310
Helix 14	14	C	99	103	Right-handed 310
Helix 15	15	C	195	205	Right-handed alpha
Helix 16	16	D	7	14	Right-handed alpha
Helix 17	17	D	46	50	Right-handed 310
Helix 18	18	D	63	65	Right-handed 310
Helix 19	19	D	99	102	Right-handed 310
Helix 20	20	D	196	206	Right-handed alpha

There are 9 sheets in PDB entry 2WV5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	54	57	anti-parallel
Strand 3	A	16	22	anti-parallel
Strand 4	A	27	37	anti-parallel
Strand 5	E	8	9	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	27	37	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	121	first strand
Strand 2	A	125	141	anti-parallel
Strand 3	A	147	155	anti-parallel
Strand 4	A	188	193	anti-parallel
Strand 5	A	176	185	parallel
Strand 6	A	166	169	anti-parallel
Strand 7	A	114	121	first strand

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	16	22	anti-parallel
Strand 4	B	27	37	anti-parallel
Strand 5	B	67	75	first strand
Strand 6	B	80	90	anti-parallel
Strand 7	B	40	44	anti-parallel
Strand 8	F	8	9	anti-parallel
Strand 9	B	27	37	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	121	first strand
Strand 2	B	125	141	anti-parallel
Strand 3	B	147	155	anti-parallel
Strand 4	B	188	193	anti-parallel
Strand 5	B	175	185	parallel
Strand 6	B	166	170	anti-parallel
Strand 7	B	114	121	first strand

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	54	57	anti-parallel
Strand 3	C	16	23	anti-parallel
Strand 4	C	26	37	anti-parallel
Strand 5	C	67	75	first strand
Strand 6	C	80	90	anti-parallel
Strand 7	C	40	44	anti-parallel
Strand 8	G	8	9	anti-parallel
Strand 9	C	26	37	anti-parallel

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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	121	first strand
Strand 2	C	125	141	anti-parallel
Strand 3	C	147	156	anti-parallel
Strand 4	C	166	169	first strand
Strand 5	C	176	185	first strand
Strand 6	C	188	193	first strand
Strand 7	G	4	5	first strand
Strand 8	C	176	185	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	54	57	anti-parallel
Strand 3	D	16	23	anti-parallel
Strand 4	D	26	37	anti-parallel
Strand 5	D	67	75	first strand
Strand 6	D	80	90	anti-parallel
Strand 7	D	40	44	anti-parallel
Strand 8	H	8	9	anti-parallel
Strand 9	D	26	37	anti-parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	121	first strand
Strand 2	D	125	141	anti-parallel
Strand 3	D	147	155	first strand
Strand 4	D	166	170	first strand
Strand 5	D	175	185	first strand
Strand 6	D	188	193	first strand
Strand 7	H	4	5	first strand
Strand 8	D	175	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WV5