Analysis of interatomic Contacts of Structural Units in PDB entry:
2WVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WVY entry

There are 3 chains in PDB entry 2WVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	LYS 758
B	SER 22	LYS 758
C	SER 22	LYS 758

There are 76 helices in PDB entry 2WVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	32	Right-handed 310
Helix 2	2	A	181	183	Right-handed 310
Helix 3	3	A	260	272	Right-handed alpha
Helix 4	4	A	276	293	Right-handed alpha
Helix 5	5	A	301	316	Right-handed alpha
Helix 6	6	A	352	356	Right-handed alpha
Helix 7	7	A	358	367	Right-handed alpha
Helix 8	8	A	367	386	Right-handed alpha
Helix 9	9	A	403	415	Right-handed alpha
Helix 10	10	A	421	434	Right-handed alpha
Helix 11	11	A	447	455	Right-handed alpha
Helix 12	12	A	464	486	Right-handed alpha
Helix 13	13	A	488	497	Right-handed alpha
Helix 14	14	A	498	504	Right-handed 310
Helix 15	15	A	539	544	Right-handed alpha
Helix 16	16	A	550	559	Right-handed alpha
Helix 17	17	A	560	572	Right-handed alpha
Helix 18	18	A	579	583	Right-handed 310
Helix 19	19	A	584	598	Right-handed alpha
Helix 20	20	A	605	609	Right-handed 310
Helix 21	21	A	610	618	Right-handed 310
Helix 22	22	A	620	635	Right-handed alpha
Helix 23	23	A	652	662	Right-handed alpha
Helix 24	24	A	724	729	Right-handed alpha
Helix 25	25	A	748	752	Right-handed 310
Helix 26	26	B	27	32	Right-handed 310
Helix 27	27	B	181	183	Right-handed 310
Helix 28	28	B	260	272	Right-handed alpha
Helix 29	29	B	276	293	Right-handed alpha
Helix 30	30	B	301	316	Right-handed alpha
Helix 31	31	B	352	356	Right-handed alpha
Helix 32	32	B	358	367	Right-handed alpha
Helix 33	33	B	367	386	Right-handed alpha
Helix 34	34	B	404	414	Right-handed alpha
Helix 35	35	B	421	434	Right-handed alpha
Helix 36	36	B	447	455	Right-handed alpha
Helix 37	37	B	464	487	Right-handed alpha
Helix 38	38	B	488	499	Right-handed alpha
Helix 39	39	B	500	504	Right-handed 310
Helix 40	40	B	539	544	Right-handed alpha
Helix 41	41	B	550	559	Right-handed alpha
Helix 42	42	B	560	572	Right-handed alpha
Helix 43	43	B	579	583	Right-handed 310
Helix 44	44	B	584	599	Right-handed alpha
Helix 45	45	B	605	609	Right-handed 310
Helix 46	46	B	610	617	Right-handed 310
Helix 47	47	B	620	635	Right-handed alpha
Helix 48	48	B	652	662	Right-handed alpha
Helix 49	49	B	688	690	Right-handed 310
Helix 50	50	B	724	729	Right-handed alpha
Helix 51	51	B	748	752	Right-handed 310
Helix 52	52	C	27	32	Right-handed 310
Helix 53	53	C	260	272	Right-handed alpha
Helix 54	54	C	276	293	Right-handed alpha
Helix 55	55	C	301	316	Right-handed alpha
Helix 56	56	C	352	356	Right-handed alpha
Helix 57	57	C	358	367	Right-handed alpha
Helix 58	58	C	367	386	Right-handed alpha
Helix 59	59	C	404	415	Right-handed alpha
Helix 60	60	C	421	435	Right-handed alpha
Helix 61	61	C	447	455	Right-handed alpha
Helix 62	62	C	464	486	Right-handed alpha
Helix 63	63	C	488	497	Right-handed alpha
Helix 64	64	C	498	504	Right-handed 310
Helix 65	65	C	539	544	Right-handed alpha
Helix 66	66	C	550	559	Right-handed alpha
Helix 67	67	C	560	572	Right-handed alpha
Helix 68	68	C	579	583	Right-handed 310
Helix 69	69	C	584	599	Right-handed alpha
Helix 70	70	C	605	609	Right-handed 310
Helix 71	71	C	610	618	Right-handed 310
Helix 72	72	C	620	635	Right-handed alpha
Helix 73	73	C	652	662	Right-handed alpha
Helix 74	74	C	688	690	Right-handed 310
Helix 75	75	C	724	729	Right-handed alpha
Helix 76	76	C	748	752	Right-handed 310

There are 24 sheets in PDB entry 2WVY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH, CA, CB, CC, CD, CE, CF, CG, CH,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	84	88	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	164	169	anti-parallel
Strand 5	A	237	242	anti-parallel
Strand 6	A	215	219	anti-parallel
Strand 7	A	224	226	anti-parallel

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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	119	128	anti-parallel
Strand 3	A	133	137	anti-parallel
Strand 4	A	142	147	anti-parallel
Strand 5	A	151	157	anti-parallel
Strand 6	A	250	257	anti-parallel
Strand 7	A	203	209	anti-parallel
Strand 8	A	185	190	anti-parallel
Strand 9	A	175	180	anti-parallel
Strand 10	A	230	233	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	298	first strand
Strand 2	A	682	686	anti-parallel
Strand 3	A	692	696	anti-parallel
Strand 4	A	731	738	parallel
Strand 5	A	706	712	anti-parallel
Strand 6	A	715	716	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	347	348	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	341	343	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	391	392	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	A	512	513	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	664	first strand
Strand 2	A	672	675	anti-parallel
Strand 3	A	721	723	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	65	first strand
Strand 2	B	84	88	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	164	169	anti-parallel
Strand 5	B	237	242	anti-parallel
Strand 6	B	215	219	anti-parallel
Strand 7	B	224	226	anti-parallel

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There are 10 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	119	128	anti-parallel
Strand 3	B	133	137	anti-parallel
Strand 4	B	142	147	anti-parallel
Strand 5	B	151	157	anti-parallel
Strand 6	B	250	257	anti-parallel
Strand 7	B	203	209	anti-parallel
Strand 8	B	185	190	anti-parallel
Strand 9	B	175	180	anti-parallel
Strand 10	B	230	233	anti-parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	298	first strand
Strand 2	B	682	686	anti-parallel
Strand 3	B	692	696	anti-parallel
Strand 4	B	731	738	parallel
Strand 5	B	706	712	anti-parallel
Strand 6	B	715	716	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	347	348	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	341	343	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	391	392	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	507	first strand
Strand 2	B	512	513	anti-parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	B	672	675	anti-parallel
Strand 3	B	721	723	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	84	88	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	164	169	anti-parallel
Strand 5	C	237	242	anti-parallel
Strand 6	C	215	219	anti-parallel
Strand 7	C	224	226	anti-parallel

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There are 10 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	119	128	anti-parallel
Strand 3	C	133	137	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	151	157	anti-parallel
Strand 6	C	250	257	anti-parallel
Strand 7	C	203	209	anti-parallel
Strand 8	C	185	190	anti-parallel
Strand 9	C	175	180	anti-parallel
Strand 10	C	230	233	anti-parallel

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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	298	first strand
Strand 2	C	682	686	anti-parallel
Strand 3	C	692	696	anti-parallel
Strand 4	C	731	738	parallel
Strand 5	C	706	712	anti-parallel
Strand 6	C	715	716	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	347	348	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	325	first strand
Strand 2	C	331	334	anti-parallel
Strand 3	C	341	343	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	391	392	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	507	first strand
Strand 2	C	512	513	anti-parallel

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There are 3 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	663	664	first strand
Strand 2	C	672	675	anti-parallel
Strand 3	C	721	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WVY