Analysis of interatomic Contacts of Structural Units in PDB entry:
2WY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WY3 entry

There are 4 chains in PDB entry 2WY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0GLY 175
B
 VAL 27PRO 163
C
 GLU 1GLY 175
D
 VAL 27GLY 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2WY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 53Right-handed alpha
Helix 2
2
A
56 79Right-handed alpha
Helix 3
3
A
132 148Right-handed alpha
Helix 4
4
A
152 175Right-handed alpha
Helix 5
5
B
41 48Right-handed 310
Helix 6
6
C
47 53Right-handed alpha
Helix 7
7
C
56 79Right-handed alpha
Helix 8
8
C
132 146Right-handed alpha
Helix 9
9
C
152 175Right-handed alpha
Helix 10
10
D
41 48Right-handed 310
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There are 12 sheets in PDB entry 2WY3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
3 14anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
23 28anti-parallel
Strand 4
A
3 14anti-parallel
Strand 5
A
17 18anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
23 28anti-parallel
Strand 4
A
3 14anti-parallel
Strand 5
A
87 98anti-parallel
Strand 6
A
104 112anti-parallel
Strand 7
A
115 121anti-parallel
Strand 8
A
127 128anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
36 39anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
147 157parallel
Strand 3
B
136 144anti-parallel
Strand 4
B
75 81anti-parallel
Strand 5
B
88 94anti-parallel
Strand 6
B
97 100anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
121 128anti-parallel
Strand 3
B
108 115anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
3 14anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
31 37anti-parallel
Strand 3
C
23 28anti-parallel
Strand 4
C
3 14anti-parallel
Strand 5
C
17 18anti-parallel
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There are 8 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
31 37anti-parallel
Strand 3
C
23 28anti-parallel
Strand 4
C
3 14anti-parallel
Strand 5
C
88 98anti-parallel
Strand 6
C
104 112anti-parallel
Strand 7
C
115 121anti-parallel
Strand 8
C
127 128anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 31first strand
Strand 2
D
36 39anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 57first strand
Strand 2
D
147 157parallel
Strand 3
D
136 144anti-parallel
Strand 4
D
75 81anti-parallel
Strand 5
D
88 94anti-parallel
Strand 6
D
97 100anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 67first strand
Strand 2
D
121 128anti-parallel
Strand 3
D
108 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il