Analysis of interatomic Contacts of Structural Units in PDB entry:
2WY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WY6 entry

There are 3 chains in PDB entry 2WY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 1LYS 370
B
 TRP 1LYS 370
C
 TRP 1LYS 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 2WY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 26Right-handed alpha
Helix 2
2
A
31 44Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
55 58Right-handed 310
Helix 5
5
A
65 69Right-handed 310
Helix 6
6
A
82 87Right-handed 310
Helix 7
7
A
93 111Right-handed alpha
Helix 8
8
A
113 132Right-handed alpha
Helix 9
9
A
146 157Right-handed alpha
Helix 10
10
A
158 163Right-handed 310
Helix 11
11
A
173 182Right-handed alpha
Helix 12
12
A
184 207Right-handed alpha
Helix 13
13
A
213 243Right-handed alpha
Helix 14
14
A
317 319Right-handed 310
Helix 15
15
B
9 25Right-handed alpha
Helix 16
16
B
31 44Right-handed alpha
Helix 17
17
B
44 54Right-handed alpha
Helix 18
18
B
55 58Right-handed 310
Helix 19
19
B
65 69Right-handed 310
Helix 20
20
B
82 87Right-handed 310
Helix 21
21
B
93 111Right-handed alpha
Helix 22
22
B
113 132Right-handed alpha
Helix 23
23
B
146 155Right-handed alpha
Helix 24
24
B
158 163Right-handed 310
Helix 25
25
B
173 182Right-handed alpha
Helix 26
26
B
184 207Right-handed alpha
Helix 27
27
B
213 243Right-handed alpha
Helix 28
28
B
317 321Right-handed 310
Helix 29
29
C
9 26Right-handed alpha
Helix 30
30
C
31 44Right-handed alpha
Helix 31
31
C
44 54Right-handed alpha
Helix 32
32
C
55 58Right-handed 310
Helix 33
33
C
65 69Right-handed 310
Helix 34
34
C
82 87Right-handed 310
Helix 35
35
C
93 111Right-handed alpha
Helix 36
36
C
113 132Right-handed alpha
Helix 37
37
C
146 155Right-handed alpha
Helix 38
38
C
158 163Right-handed 310
Helix 39
39
C
173 182Right-handed alpha
Helix 40
40
C
184 207Right-handed alpha
Helix 41
41
C
213 243Right-handed alpha
Helix 42
42
C
317 321Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2WY6. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 310first strand
Strand 2
A
257 264anti-parallel
Strand 3
A
340 346anti-parallel
Strand 4
A
351 356anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
275 282anti-parallel
Strand 3
A
321 329anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 310first strand
Strand 2
B
257 264anti-parallel
Strand 3
B
340 346anti-parallel
Strand 4
B
351 356anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 291first strand
Strand 2
B
275 281anti-parallel
Strand 3
B
323 329anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 310first strand
Strand 2
C
257 264anti-parallel
Strand 3
C
340 346anti-parallel
Strand 4
C
351 356anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
287 291first strand
Strand 2
C
275 281anti-parallel
Strand 3
C
325 329anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il