Analysis of interatomic Contacts of Structural Units in PDB entry:
2WYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WYM entry

There are 6 chains in PDB entry 2WYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 340
B	MET 1	GLY 337
C	SER 2	GLY 337
D	MET 1	ASP 339
E	MET 1	PHE 338
F	SER 2	PHE 338

There are 68 helices in PDB entry 2WYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	7	Right-handed alpha
Helix 2	2	A	8	17	Right-handed alpha
Helix 3	3	A	22	31	Right-handed alpha
Helix 4	4	A	103	107	Right-handed 310
Helix 5	5	A	119	123	Right-handed 310
Helix 6	6	A	124	135	Right-handed alpha
Helix 7	7	A	144	155	Right-handed alpha
Helix 8	8	A	157	159	Right-handed 310
Helix 9	9	A	232	240	Right-handed alpha
Helix 10	10	A	261	272	Right-handed alpha
Helix 11	11	A	286	289	Right-handed 310
Helix 12	12	A	292	303	Right-handed alpha
Helix 13	13	B	2	7	Right-handed alpha
Helix 14	14	B	8	17	Right-handed alpha
Helix 15	15	B	22	31	Right-handed alpha
Helix 16	16	B	103	107	Right-handed 310
Helix 17	17	B	119	123	Right-handed 310
Helix 18	18	B	124	135	Right-handed alpha
Helix 19	19	B	144	154	Right-handed alpha
Helix 20	20	B	157	159	Right-handed 310
Helix 21	21	B	231	240	Right-handed alpha
Helix 22	22	B	261	273	Right-handed alpha
Helix 23	23	B	292	303	Right-handed alpha
Helix 24	24	C	2	7	Right-handed alpha
Helix 25	25	C	8	17	Right-handed alpha
Helix 26	26	C	22	31	Right-handed alpha
Helix 27	27	C	103	107	Right-handed 310
Helix 28	28	C	124	135	Right-handed alpha
Helix 29	29	C	144	155	Right-handed alpha
Helix 30	30	C	231	240	Right-handed alpha
Helix 31	31	C	261	272	Right-handed alpha
Helix 32	32	C	286	289	Right-handed 310
Helix 33	33	C	292	303	Right-handed alpha
Helix 34	34	D	2	7	Right-handed alpha
Helix 35	35	D	8	17	Right-handed alpha
Helix 36	36	D	22	31	Right-handed alpha
Helix 37	37	D	103	107	Right-handed 310
Helix 38	38	D	119	123	Right-handed 310
Helix 39	39	D	124	135	Right-handed alpha
Helix 40	40	D	144	155	Right-handed alpha
Helix 41	41	D	157	159	Right-handed 310
Helix 42	42	D	204	208	Right-handed 310
Helix 43	43	D	231	240	Right-handed alpha
Helix 44	44	D	261	272	Right-handed alpha
Helix 45	45	D	286	289	Right-handed 310
Helix 46	46	D	292	307	Right-handed alpha
Helix 47	47	E	2	7	Right-handed alpha
Helix 48	48	E	8	17	Right-handed alpha
Helix 49	49	E	22	30	Right-handed alpha
Helix 50	50	E	103	107	Right-handed 310
Helix 51	51	E	119	123	Right-handed 310
Helix 52	52	E	124	135	Right-handed alpha
Helix 53	53	E	144	155	Right-handed alpha
Helix 54	54	E	157	159	Right-handed 310
Helix 55	55	E	231	240	Right-handed alpha
Helix 56	56	E	261	273	Right-handed alpha
Helix 57	57	E	286	289	Right-handed 310
Helix 58	58	E	292	303	Right-handed alpha
Helix 59	59	F	2	7	Right-handed alpha
Helix 60	60	F	8	17	Right-handed alpha
Helix 61	61	F	22	30	Right-handed alpha
Helix 62	62	F	103	107	Right-handed 310
Helix 63	63	F	124	135	Right-handed alpha
Helix 64	64	F	144	155	Right-handed alpha
Helix 65	65	F	231	240	Right-handed alpha
Helix 66	66	F	261	272	Right-handed alpha
Helix 67	67	F	286	289	Right-handed 310
Helix 68	68	F	292	303	Right-handed alpha

There are 12 sheets in PDB entry 2WYM. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	141	143	parallel
Strand 3	A	112	114	parallel
Strand 4	A	57	60	parallel
Strand 5	A	47	51	anti-parallel
Strand 6	A	38	44	anti-parallel
Strand 7	A	320	323	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	210	215	anti-parallel
Strand 4	A	220	223	anti-parallel
Strand 5	A	244	248	parallel
Strand 6	A	276	280	parallel
Strand 7	A	311	312	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	141	143	parallel
Strand 3	B	112	114	parallel
Strand 4	B	57	60	parallel
Strand 5	B	48	51	anti-parallel
Strand 6	B	38	42	anti-parallel
Strand 7	B	320	323	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	175	181	anti-parallel
Strand 3	B	210	216	anti-parallel
Strand 4	B	219	223	anti-parallel
Strand 5	B	244	248	parallel
Strand 6	B	276	280	parallel
Strand 7	B	311	312	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	141	143	parallel
Strand 3	C	112	114	parallel
Strand 4	C	57	60	parallel
Strand 5	C	48	51	anti-parallel
Strand 6	C	38	42	anti-parallel
Strand 7	C	320	323	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	172	first strand
Strand 2	C	175	181	anti-parallel
Strand 3	C	210	215	anti-parallel
Strand 4	C	220	223	anti-parallel
Strand 5	C	244	248	parallel
Strand 6	C	276	280	parallel
Strand 7	C	311	312	parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	141	143	parallel
Strand 3	D	112	114	parallel
Strand 4	D	57	60	parallel
Strand 5	D	47	51	anti-parallel
Strand 6	D	38	44	anti-parallel
Strand 7	D	320	323	anti-parallel

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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	172	first strand
Strand 2	D	175	181	anti-parallel
Strand 3	D	210	216	anti-parallel
Strand 4	D	219	223	anti-parallel
Strand 5	D	244	248	parallel
Strand 6	D	276	280	parallel
Strand 7	D	311	312	parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	163	first strand
Strand 2	E	141	143	parallel
Strand 3	E	112	114	parallel
Strand 4	E	57	60	parallel
Strand 5	E	47	52	anti-parallel
Strand 6	E	38	44	anti-parallel
Strand 7	E	320	323	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	172	first strand
Strand 2	E	175	181	anti-parallel
Strand 3	E	210	216	anti-parallel
Strand 4	E	219	223	anti-parallel
Strand 5	E	244	248	parallel
Strand 6	E	276	280	parallel
Strand 7	E	311	312	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	163	first strand
Strand 2	F	141	143	parallel
Strand 3	F	112	114	parallel
Strand 4	F	57	60	parallel
Strand 5	F	47	51	anti-parallel
Strand 6	F	38	44	anti-parallel
Strand 7	F	320	323	anti-parallel

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There are 7 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	172	first strand
Strand 2	F	175	180	anti-parallel
Strand 3	F	211	215	anti-parallel
Strand 4	F	220	223	anti-parallel
Strand 5	F	244	248	parallel
Strand 6	F	276	280	parallel
Strand 7	F	311	312	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WYM