Analysis of interatomic Contacts of Structural Units in PDB entry:
2WYO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WYO entry

There are 4 chains in PDB entry 2WYO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -6	PRO 555
B	HIS 0	PRO 555
C	GLY -1	PRO 555
D	GLY -1	PRO 555

There are 73 helices in PDB entry 2WYO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	0	9	Right-handed alpha
Helix 2	2	A	13	26	Right-handed alpha
Helix 3	3	A	51	60	Right-handed alpha
Helix 4	4	A	60	73	Right-handed alpha
Helix 5	5	A	74	82	Right-handed alpha
Helix 6	6	A	82	89	Right-handed alpha
Helix 7	7	A	92	105	Right-handed alpha
Helix 8	8	A	154	175	Right-handed alpha
Helix 9	9	A	188	192	Right-handed 310
Helix 10	10	A	202	222	Right-handed alpha
Helix 11	11	A	223	232	Right-handed alpha
Helix 12	12	A	266	280	Right-handed alpha
Helix 13	13	A	289	296	Right-handed alpha
Helix 14	14	A	328	332	Right-handed 310
Helix 15	15	A	334	347	Right-handed alpha
Helix 16	16	A	354	360	Right-handed alpha
Helix 17	17	A	362	369	Right-handed alpha
Helix 18	18	A	372	381	Right-handed alpha
Helix 19	19	A	384	393	Right-handed alpha
Helix 20	20	A	410	417	Right-handed alpha
Helix 21	21	A	436	443	Right-handed alpha
Helix 22	22	A	513	517	Right-handed 310
Helix 23	23	B	1	9	Right-handed alpha
Helix 24	24	B	13	26	Right-handed alpha
Helix 25	25	B	50	88	Right-handed alpha
Helix 26	26	B	92	105	Right-handed alpha
Helix 27	27	B	154	176	Right-handed alpha
Helix 28	28	B	182	186	Right-handed 310
Helix 29	29	B	202	222	Right-handed alpha
Helix 30	30	B	223	232	Right-handed alpha
Helix 31	31	B	266	280	Right-handed alpha
Helix 32	32	B	289	296	Right-handed alpha
Helix 33	33	B	328	332	Right-handed 310
Helix 34	34	B	334	347	Right-handed alpha
Helix 35	35	B	354	360	Right-handed alpha
Helix 36	36	B	362	369	Right-handed alpha
Helix 37	37	B	372	381	Right-handed alpha
Helix 38	38	B	384	393	Right-handed alpha
Helix 39	39	C	0	9	Right-handed alpha
Helix 40	40	C	13	26	Right-handed alpha
Helix 41	41	C	51	73	Right-handed alpha
Helix 42	42	C	74	81	Right-handed alpha
Helix 43	43	C	82	89	Right-handed alpha
Helix 44	44	C	92	105	Right-handed alpha
Helix 45	45	C	154	175	Right-handed alpha
Helix 46	46	C	202	223	Right-handed alpha
Helix 47	47	C	223	235	Right-handed alpha
Helix 48	48	C	266	280	Right-handed alpha
Helix 49	49	C	289	296	Right-handed alpha
Helix 50	50	C	328	332	Right-handed 310
Helix 51	51	C	334	347	Right-handed alpha
Helix 52	52	C	354	360	Right-handed alpha
Helix 53	53	C	362	369	Right-handed alpha
Helix 54	54	C	384	393	Right-handed alpha
Helix 55	55	C	408	413	Right-handed alpha
Helix 56	56	D	0	10	Right-handed alpha
Helix 57	57	D	13	26	Right-handed alpha
Helix 58	58	D	51	89	Right-handed alpha
Helix 59	59	D	92	105	Right-handed alpha
Helix 60	60	D	154	175	Right-handed alpha
Helix 61	61	D	202	222	Right-handed alpha
Helix 62	62	D	223	234	Right-handed alpha
Helix 63	63	D	266	280	Right-handed alpha
Helix 64	64	D	289	296	Right-handed alpha
Helix 65	65	D	328	332	Right-handed 310
Helix 66	66	D	334	347	Right-handed alpha
Helix 67	67	D	354	359	Right-handed alpha
Helix 68	68	D	362	369	Right-handed alpha
Helix 69	69	D	371	381	Right-handed alpha
Helix 70	70	D	384	392	Right-handed alpha
Helix 71	71	D	393	395	Right-handed 310
Helix 72	72	D	410	415	Right-handed alpha
Helix 73	73	D	513	517	Right-handed 310

There are 19 sheets in PDB entry 2WYO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	37	39	anti-parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	145	first strand
Strand 2	A	114	124	anti-parallel
Strand 3	A	485	505	anti-parallel
Strand 4	A	476	482	anti-parallel
Strand 5	A	42	43	anti-parallel
Strand 6	A	548	549	anti-parallel
Strand 7	A	519	533	parallel
Strand 8	A	485	505	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	145	first strand
Strand 2	A	485	505	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	551	554	parallel
Strand 3	A	197	198	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	288	first strand
Strand 2	A	255	260	parallel
Strand 3	A	316	324	parallel
Strand 4	A	309	312	anti-parallel
Strand 5	A	297	300	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	288	first strand
Strand 2	A	316	324	parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	466	468	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	37	39	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	476	481	anti-parallel
Strand 3	B	488	494	anti-parallel
Strand 4	B	519	533	anti-parallel
Strand 5	B	547	549	anti-parallel
Strand 6	B	42	43	first strand

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	551	553	parallel
Strand 3	B	197	199	anti-parallel

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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	288	first strand
Strand 2	B	255	259	parallel
Strand 3	B	316	323	parallel
Strand 4	B	297	300	first strand
Strand 5	B	309	312	anti-parallel
Strand 6	B	350	352	anti-parallel
Strand 7	B	316	323	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	37	39	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	551	554	parallel
Strand 3	C	197	198	anti-parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	288	first strand
Strand 2	C	255	260	parallel
Strand 3	C	316	324	parallel
Strand 4	C	297	300	first strand
Strand 5	C	309	312	anti-parallel
Strand 6	C	350	352	anti-parallel
Strand 7	C	316	324	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	467	468	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	37	39	anti-parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	476	482	anti-parallel
Strand 3	D	485	505	parallel
Strand 4	D	114	124	anti-parallel
Strand 5	D	139	145	anti-parallel
Strand 6	D	519	533	first strand
Strand 7	D	547	549	first strand
Strand 8	D	42	43	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	551	554	parallel
Strand 3	D	197	198	anti-parallel

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There are 7 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	288	first strand
Strand 2	D	255	260	parallel
Strand 3	D	316	324	parallel
Strand 4	D	297	300	first strand
Strand 5	D	309	312	anti-parallel
Strand 6	D	350	352	anti-parallel
Strand 7	D	316	324	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WYO

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WYO