Analysis of interatomic Contacts of Structural Units in PDB entry:
2WYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WYS entry

There are 2 chains in PDB entry 2WYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 32ALA 551
B
 MSE 32ALA 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2WYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 68Right-handed 310
Helix 2
2
A
194 200Right-handed alpha
Helix 3
3
A
212 215Right-handed 310
Helix 4
4
A
216 227Right-handed alpha
Helix 5
5
A
237 242Right-handed alpha
Helix 6
6
A
259 268Right-handed alpha
Helix 7
7
A
285 289Right-handed 310
Helix 8
8
A
301 324Right-handed alpha
Helix 9
9
A
342 349Right-handed alpha
Helix 10
10
A
362 369Right-handed alpha
Helix 11
11
A
372 385Right-handed alpha
Helix 12
12
A
400 417Right-handed alpha
Helix 13
13
A
438 451Right-handed alpha
Helix 14
14
A
471 492Right-handed alpha
Helix 15
15
A
514 518Right-handed 310
Helix 16
16
A
529 537Right-handed alpha
Helix 17
17
A
540 544Right-handed 310
Helix 18
18
B
64 68Right-handed 310
Helix 19
19
B
194 199Right-handed alpha
Helix 20
20
B
212 215Right-handed 310
Helix 21
21
B
216 227Right-handed alpha
Helix 22
22
B
237 241Right-handed alpha
Helix 23
23
B
256 258Right-handed 310
Helix 24
24
B
259 269Right-handed alpha
Helix 25
25
B
286 289Right-handed 310
Helix 26
26
B
301 324Right-handed alpha
Helix 27
27
B
342 349Right-handed alpha
Helix 28
28
B
362 369Right-handed alpha
Helix 29
29
B
372 385Right-handed alpha
Helix 30
30
B
400 416Right-handed alpha
Helix 31
31
B
438 451Right-handed alpha
Helix 32
32
B
471 492Right-handed alpha
Helix 33
33
B
514 518Right-handed 310
Helix 34
34
B
529 536Right-handed alpha
Helix 35
35
B
540 544Right-handed 310
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There are 12 sheets in PDB entry 2WYS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
170 179parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
96 104anti-parallel
Strand 5
A
144 150anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
34 39parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
160 164anti-parallel
Strand 4
A
111 117anti-parallel
Strand 5
A
131 137anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
155 156anti-parallel
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There are 9 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
498 503parallel
Strand 3
A
455 464parallel
Strand 4
A
422 425parallel
Strand 5
A
390 395parallel
Strand 6
A
331 336parallel
Strand 7
A
272 279parallel
Strand 8
A
229 232parallel
Strand 9
A
204 209first strand
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
170 179anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
170 179anti-parallel
Strand 4
B
98 104parallel
Strand 5
B
143 147anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
170 179anti-parallel
Strand 4
B
34 39anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
159 164anti-parallel
Strand 3
B
110 116anti-parallel
Strand 4
B
131 138anti-parallel
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There are 9 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 209first strand
Strand 2
B
498 503parallel
Strand 3
B
455 464parallel
Strand 4
B
422 425parallel
Strand 5
B
390 395parallel
Strand 6
B
329 336parallel
Strand 7
B
272 280parallel
Strand 8
B
229 232parallel
Strand 9
B
204 209first strand
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 248first strand
Strand 2
B
251 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il