Analysis of interatomic Contacts of Structural Units in PDB entry:
2X0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2X0D entry

There are 2 chains in PDB entry 2X0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 26LEU 413
B
 PHE 26LEU 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2X0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
57 61Right-handed 310
Helix 3
3
A
62 73Right-handed alpha
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
98 100Right-handed 310
Helix 6
6
A
140 159Right-handed alpha
Helix 7
7
A
172 177Right-handed 310
Helix 8
8
A
180 189Right-handed alpha
Helix 9
9
A
202 213Right-handed alpha
Helix 10
10
A
227 232Right-handed alpha
Helix 11
11
A
252 255Right-handed 310
Helix 12
12
A
256 271Right-handed alpha
Helix 13
13
A
273 277Right-handed 310
Helix 14
14
A
304 315Right-handed alpha
Helix 15
15
A
329 337Right-handed alpha
Helix 16
16
A
350 354Right-handed 310
Helix 17
17
A
365 380Right-handed alpha
Helix 18
18
A
393 397Right-handed 310
Helix 19
19
A
405 411Right-handed alpha
Helix 20
20
B
31 35Right-handed 310
Helix 21
21
B
57 61Right-handed 310
Helix 22
22
B
62 73Right-handed alpha
Helix 23
23
B
93 99Right-handed 310
Helix 24
24
B
140 159Right-handed alpha
Helix 25
25
B
172 177Right-handed 310
Helix 26
26
B
180 192Right-handed alpha
Helix 27
27
B
202 212Right-handed alpha
Helix 28
28
B
227 232Right-handed alpha
Helix 29
29
B
252 255Right-handed 310
Helix 30
30
B
256 271Right-handed alpha
Helix 31
31
B
273 277Right-handed 310
Helix 32
32
B
304 315Right-handed alpha
Helix 33
33
B
329 337Right-handed alpha
Helix 34
34
B
350 354Right-handed 310
Helix 35
35
B
365 381Right-handed alpha
Helix 36
36
B
393 398Right-handed 310
Helix 37
37
B
405 411Right-handed alpha
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There are 6 sheets in PDB entry 2X0D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
128 130parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
115 119parallel
Strand 3
A
81 86parallel
Strand 4
A
48 53parallel
Strand 5
A
134 138parallel
Strand 6
A
165 169parallel
Strand 7
A
196 201parallel
Strand 8
A
218 222parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
295 301anti-parallel
Strand 3
A
278 283parallel
Strand 4
A
243 248parallel
Strand 5
A
317 319parallel
Strand 6
A
340 344parallel
Strand 7
A
358 361parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
128 129parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
115 119parallel
Strand 3
B
81 86parallel
Strand 4
B
48 53parallel
Strand 5
B
134 138parallel
Strand 6
B
165 169parallel
Strand 7
B
196 201parallel
Strand 8
B
218 222parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 292first strand
Strand 2
B
295 301anti-parallel
Strand 3
B
278 283parallel
Strand 4
B
243 248parallel
Strand 5
B
317 319parallel
Strand 6
B
340 344parallel
Strand 7
B
358 361parallel
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