Analysis of interatomic Contacts of Structural Units in PDB entry:
2X60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2X60 entry

There are 2 chains in PDB entry 2X60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1PHE 333
B
 VAL 1PHE 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2X60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
24 28Right-handed 310
Helix 3
3
A
35 46Right-handed alpha
Helix 4
4
A
49 51Right-handed 310
Helix 5
5
A
61 69Right-handed alpha
Helix 6
6
A
73 75Right-handed 310
Helix 7
7
A
85 96Right-handed alpha
Helix 8
8
A
114 133Right-handed alpha
Helix 9
9
A
173 184Right-handed alpha
Helix 10
10
A
197 208Right-handed alpha
Helix 11
11
A
208 216Right-handed alpha
Helix 12
12
A
222 232Right-handed alpha
Helix 13
13
A
237 242Right-handed alpha
Helix 14
14
A
263 272Right-handed alpha
Helix 15
15
A
320 323Right-handed 310
Helix 16
16
A
324 333Right-handed alpha
Helix 17
17
B
12 16Right-handed 310
Helix 18
18
B
24 28Right-handed 310
Helix 19
19
B
35 46Right-handed alpha
Helix 20
20
B
49 51Right-handed 310
Helix 21
21
B
61 69Right-handed alpha
Helix 22
22
B
73 75Right-handed 310
Helix 23
23
B
85 96Right-handed alpha
Helix 24
24
B
114 133Right-handed alpha
Helix 25
25
B
173 184Right-handed alpha
Helix 26
26
B
197 208Right-handed alpha
Helix 27
27
B
208 216Right-handed alpha
Helix 28
28
B
222 231Right-handed alpha
Helix 29
29
B
237 242Right-handed alpha
Helix 30
30
B
263 272Right-handed alpha
Helix 31
31
B
320 323Right-handed 310
Helix 32
32
B
324 333Right-handed alpha
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There are 6 sheets in PDB entry 2X60. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
102 107parallel
Strand 3
A
186 196anti-parallel
Strand 4
A
151 159anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
249 254anti-parallel
Strand 7
A
135 140parallel
Strand 8
A
3 7parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
259 260anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
297 300parallel
Strand 3
B
313 318parallel
Strand 4
B
305 310anti-parallel
Strand 5
B
288 291parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
305 310parallel
Strand 3
A
313 318anti-parallel
Strand 4
B
297 300parallel
Strand 5
B
280 283parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
102 107parallel
Strand 3
B
186 196anti-parallel
Strand 4
B
151 159anti-parallel
Strand 5
B
162 169anti-parallel
Strand 6
B
249 254anti-parallel
Strand 7
B
135 140parallel
Strand 8
B
3 8parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
259 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il