Analysis of interatomic Contacts of Structural Units in PDB entry:
2XDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2XDV entry

There is 1 chain in PDB entry 2XDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 30VAL 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2XDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 46Right-handed alpha
Helix 2
2
A
50 58Right-handed alpha
Helix 3
3
A
70 81Right-handed alpha
Helix 4
4
A
82 87Right-handed alpha
Helix 5
5
A
140 143Right-handed 310
Helix 6
6
A
144 159Right-handed alpha
Helix 7
7
A
263 288Right-handed alpha
Helix 8
8
A
301 321Right-handed alpha
Helix 9
9
A
329 338Right-handed alpha
Helix 10
10
A
368 370Right-handed 310
Helix 11
11
A
423 432Right-handed alpha
Helix 12
12
A
439 441Right-handed 310
Helix 13
13
A
445 459Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2XDV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
184 191anti-parallel
Strand 4
A
251 258anti-parallel
Strand 5
A
163 169anti-parallel
Strand 6
A
134 138anti-parallel
Strand 7
A
128 131anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
210 211anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
239 243anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
363 366anti-parallel
Strand 3
A
462 464anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 377first strand
Strand 2
A
390 395anti-parallel
Strand 3
A
416 420anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il