Analysis of interatomic Contacts of Structural Units in PDB entry:
2XED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2XED entry

There are 4 chains in PDB entry 2XED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -3VAL 248
B
 MET 1SER 246
C
 GLY 2SER 246
D
 GLY 2SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 2XED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 26Right-handed alpha
Helix 2
2
A
46 55Right-handed alpha
Helix 3
3
A
56 66Right-handed alpha
Helix 4
4
A
76 82Right-handed alpha
Helix 5
5
A
86 102Right-handed alpha
Helix 6
6
A
111 122Right-handed alpha
Helix 7
7
A
134 148Right-handed alpha
Helix 8
8
A
162 168Right-handed alpha
Helix 9
9
A
170 181Right-handed alpha
Helix 10
10
A
201 211Right-handed alpha
Helix 11
11
A
217 229Right-handed alpha
Helix 12
12
A
239 244Right-handed 310
Helix 13
13
B
16 26Right-handed alpha
Helix 14
14
B
46 55Right-handed alpha
Helix 15
15
B
56 66Right-handed alpha
Helix 16
16
B
76 82Right-handed alpha
Helix 17
17
B
86 102Right-handed alpha
Helix 18
18
B
111 122Right-handed alpha
Helix 19
19
B
134 148Right-handed alpha
Helix 20
20
B
162 167Right-handed alpha
Helix 21
21
B
170 181Right-handed alpha
Helix 22
22
B
199 201Right-handed 310
Helix 23
23
B
202 211Right-handed alpha
Helix 24
24
B
217 229Right-handed alpha
Helix 25
25
B
239 244Right-handed 310
Helix 26
26
C
15 26Right-handed alpha
Helix 27
27
C
46 55Right-handed alpha
Helix 28
28
C
56 66Right-handed alpha
Helix 29
29
C
76 82Right-handed alpha
Helix 30
30
C
86 102Right-handed alpha
Helix 31
31
C
111 122Right-handed alpha
Helix 32
32
C
134 148Right-handed alpha
Helix 33
33
C
162 167Right-handed alpha
Helix 34
34
C
170 180Right-handed alpha
Helix 35
35
C
199 201Right-handed 310
Helix 36
36
C
202 211Right-handed alpha
Helix 37
37
C
217 229Right-handed alpha
Helix 38
38
C
239 244Right-handed 310
Helix 39
39
D
16 26Right-handed alpha
Helix 40
40
D
46 55Right-handed alpha
Helix 41
41
D
56 66Right-handed alpha
Helix 42
42
D
76 82Right-handed alpha
Helix 43
43
D
86 102Right-handed alpha
Helix 44
44
D
111 122Right-handed alpha
Helix 45
45
D
134 148Right-handed alpha
Helix 46
46
D
162 168Right-handed alpha
Helix 47
47
D
170 181Right-handed alpha
Helix 48
48
D
201 211Right-handed alpha
Helix 49
49
D
217 229Right-handed alpha
Helix 50
50
D
239 244Right-handed 310
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There are 8 sheets in PDB entry 2XED. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
4 11parallel
Strand 3
A
71 74parallel
Strand 4
A
107 110parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 157first strand
Strand 2
A
126 131parallel
Strand 3
A
188 192parallel
Strand 4
A
214 216parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 40first strand
Strand 2
B
3 11parallel
Strand 3
B
71 74parallel
Strand 4
B
107 110parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 157first strand
Strand 2
B
126 131parallel
Strand 3
B
188 192parallel
Strand 4
B
214 216parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 40first strand
Strand 2
C
4 11parallel
Strand 3
C
71 74parallel
Strand 4
C
107 110parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 157first strand
Strand 2
C
126 131parallel
Strand 3
C
188 192parallel
Strand 4
C
214 216parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 40first strand
Strand 2
D
4 11parallel
Strand 3
D
71 74parallel
Strand 4
D
107 110parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 157first strand
Strand 2
D
126 131parallel
Strand 3
D
188 192parallel
Strand 4
D
214 216parallel
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