Analysis of interatomic Contacts of Structural Units in PDB entry:
2XJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2XJZ entry

There are 10 chains in PDB entry 2XJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 25	GLY 149
B	CYS 23	ASN 148
C	GLY 24	ASN 148
D	SER 19	ILE 147
E	CYS 23	GLY 149
I	ASP 336	THR 364
J	SER 333	ASN 363
K	ASP 336	ARG 356
L	ASP 336	THR 364
M	ASP 336	LEU 361

There are 20 helices in PDB entry 2XJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	73	82	Right-handed alpha
Helix 2	2	A	111	113	Right-handed 310
Helix 3	3	A	140	148	Right-handed alpha
Helix 4	4	B	73	82	Right-handed alpha
Helix 5	5	B	111	113	Right-handed 310
Helix 6	6	B	140	148	Right-handed alpha
Helix 7	7	C	73	82	Right-handed alpha
Helix 8	8	C	111	113	Right-handed 310
Helix 9	9	C	140	148	Right-handed alpha
Helix 10	10	D	73	82	Right-handed alpha
Helix 11	11	D	111	113	Right-handed 310
Helix 12	12	D	140	147	Right-handed alpha
Helix 13	13	E	73	82	Right-handed alpha
Helix 14	14	E	111	113	Right-handed 310
Helix 15	15	E	141	146	Right-handed alpha
Helix 16	16	I	347	349	Right-handed 310
Helix 17	17	J	347	350	Right-handed 310
Helix 18	18	K	347	350	Right-handed 310
Helix 19	19	L	347	350	Right-handed 310
Helix 20	20	M	347	349	Right-handed 310

There are 24 sheets in PDB entry 2XJZ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD, DE, EA, EB, EC, ED, EE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	34	38	anti-parallel
Strand 3	I	359	362	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	63	67	anti-parallel
Strand 3	I	355	357	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	93	94	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	99	103	anti-parallel
Strand 3	I	344	345	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	127	131	anti-parallel
Strand 3	I	337	339	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	J	359	362	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	J	355	356	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	93	94	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	99	103	anti-parallel
Strand 3	J	344	345	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	127	131	anti-parallel
Strand 3	J	336	339	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	70	72	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	93	94	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	109	first strand
Strand 2	C	99	103	anti-parallel
Strand 3	K	344	345	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	127	131	anti-parallel
Strand 3	K	337	339	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	34	38	anti-parallel
Strand 3	L	359	362	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	63	67	anti-parallel
Strand 3	L	355	357	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	93	94	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	109	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	L	344	345	anti-parallel

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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	137	first strand
Strand 2	D	127	131	anti-parallel
Strand 3	L	337	339	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	M	359	361	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	72	first strand
Strand 2	E	63	67	anti-parallel
Strand 3	M	355	357	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	93	94	anti-parallel

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There are 3 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	109	first strand
Strand 2	E	99	103	anti-parallel
Strand 3	M	344	345	anti-parallel

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There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	127	131	anti-parallel
Strand 3	M	337	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2XJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2XJZ