Analysis of interatomic Contacts of Structural Units in PDB entry:
2XVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2XVM entry

There are 2 chains in PDB entry 2XVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LYS 197
B
 ARG 4LYS 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2XVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 14Right-handed alpha
Helix 2
2
A
19 26Right-handed alpha
Helix 3
3
A
42 51Right-handed alpha
Helix 4
4
A
61 76Right-handed alpha
Helix 5
5
A
86 90Right-handed 310
Helix 6
6
A
104 108Right-handed 310
Helix 7
7
A
109 111Right-handed 310
Helix 8
8
A
112 123Right-handed alpha
Helix 9
9
A
154 160Right-handed alpha
Helix 10
10
B
7 14Right-handed alpha
Helix 11
11
B
19 26Right-handed alpha
Helix 12
12
B
42 51Right-handed alpha
Helix 13
13
B
61 75Right-handed alpha
Helix 14
14
B
86 90Right-handed 310
Helix 15
15
B
104 108Right-handed 310
Helix 16
16
B
111 123Right-handed alpha
Helix 17
17
B
154 160Right-handed alpha
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There are 6 sheets in PDB entry 2XVM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
54 59parallel
Strand 3
A
33 37parallel
Strand 4
A
96 102parallel
Strand 5
A
124 135parallel
Strand 6
A
184 195anti-parallel
Strand 7
A
172 178anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
54 59parallel
Strand 3
A
33 37parallel
Strand 4
A
96 102parallel
Strand 5
A
124 135parallel
Strand 6
A
184 195anti-parallel
Strand 7
A
164 169parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
A
184 195anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
54 59parallel
Strand 3
B
33 37parallel
Strand 4
B
96 102parallel
Strand 5
B
124 135parallel
Strand 6
B
184 195anti-parallel
Strand 7
B
172 178anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
54 59parallel
Strand 3
B
33 37parallel
Strand 4
B
96 102parallel
Strand 5
B
124 135parallel
Strand 6
B
184 195anti-parallel
Strand 7
B
164 169parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 178first strand
Strand 2
B
184 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il