Analysis of interatomic Contacts of Structural Units in PDB entry:
2XVR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2XVR entry

There are 7 chains in PDB entry 2XVR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 100	GLU 345
B	LEU 100	GLU 345
C	LEU 100	GLU 345
D	LEU 100	GLU 345
E	LEU 100	GLU 345
F	LEU 100	GLU 345
G	LEU 100	GLU 345

There are 43 helices in PDB entry 2XVR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	105	110	Right-handed alpha
Helix 2	2	A	165	172	Right-handed alpha
Helix 3	3	A	173	196	Right-handed alpha
Helix 4	4	A	228	237	Right-handed alpha
Helix 5	5	A	250	260	Right-handed alpha
Helix 6	6	A	321	328	Right-handed alpha
Helix 7	7	B	105	110	Right-handed alpha
Helix 8	8	B	165	172	Right-handed alpha
Helix 9	9	B	173	196	Right-handed alpha
Helix 10	10	B	228	237	Right-handed alpha
Helix 11	11	B	250	260	Right-handed alpha
Helix 12	12	B	323	328	Right-handed alpha
Helix 13	13	C	105	110	Right-handed alpha
Helix 14	14	C	165	172	Right-handed alpha
Helix 15	15	C	173	196	Right-handed alpha
Helix 16	16	C	228	237	Right-handed alpha
Helix 17	17	C	250	260	Right-handed alpha
Helix 18	18	C	323	328	Right-handed alpha
Helix 19	19	D	105	110	Right-handed alpha
Helix 20	20	D	165	172	Right-handed alpha
Helix 21	21	D	173	196	Right-handed alpha
Helix 22	22	D	228	237	Right-handed alpha
Helix 23	23	D	250	260	Right-handed alpha
Helix 24	24	D	323	328	Right-handed alpha
Helix 25	25	E	105	110	Right-handed alpha
Helix 26	26	E	165	172	Right-handed alpha
Helix 27	27	E	173	196	Right-handed alpha
Helix 28	28	E	228	237	Right-handed alpha
Helix 29	29	E	250	260	Right-handed alpha
Helix 30	30	E	323	328	Right-handed alpha
Helix 31	31	F	105	110	Right-handed alpha
Helix 32	32	F	165	172	Right-handed alpha
Helix 33	33	F	173	196	Right-handed alpha
Helix 34	34	F	228	237	Right-handed alpha
Helix 35	35	F	250	260	Right-handed alpha
Helix 36	36	F	323	328	Right-handed alpha
Helix 37	37	G	105	110	Right-handed alpha
Helix 38	38	G	165	172	Right-handed alpha
Helix 39	39	G	173	196	Right-handed alpha
Helix 40	40	G	228	237	Right-handed alpha
Helix 41	41	G	250	260	Right-handed alpha
Helix 42	42	G	300	304	Right-handed alpha
Helix 43	43	G	323	328	Right-handed alpha

There are 28 sheets in PDB entry 2XVR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, FD, GA, GB, GC, GD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	305	308	parallel
Strand 3	A	341	342	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	126	first strand
Strand 2	A	147	153	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	314	318	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	285	287	parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	305	308	parallel
Strand 3	B	339	342	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	126	first strand
Strand 2	B	147	153	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	314	318	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	283	287	parallel
Strand 3	B	279	280	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	305	308	parallel
Strand 3	C	341	342	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	126	first strand
Strand 2	C	147	153	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	331	335	anti-parallel
Strand 3	C	314	318	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	283	287	parallel
Strand 3	C	279	280	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	113	first strand
Strand 2	D	305	308	parallel
Strand 3	D	341	342	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	126	first strand
Strand 2	D	147	153	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	331	335	anti-parallel
Strand 3	D	314	318	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	249	first strand
Strand 2	D	285	287	parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	113	first strand
Strand 2	E	305	308	parallel
Strand 3	E	341	342	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	126	first strand
Strand 2	E	147	153	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	249	first strand
Strand 2	E	285	287	parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	318	first strand
Strand 2	E	331	333	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	113	first strand
Strand 2	F	305	308	parallel
Strand 3	F	341	342	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	126	first strand
Strand 2	F	147	153	anti-parallel

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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	249	first strand
Strand 2	F	283	287	parallel
Strand 3	F	279	280	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	318	first strand
Strand 2	F	331	335	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	113	first strand
Strand 2	G	305	308	parallel
Strand 3	G	341	342	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	125	first strand
Strand 2	G	148	153	anti-parallel

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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	163	first strand
Strand 2	G	331	335	anti-parallel
Strand 3	G	314	318	anti-parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	249	first strand
Strand 2	G	285	287	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2XVR

Analysis of interatomic Contacts of Structural Units in PDB entry:
2XVR