Analysis of interatomic Contacts of Structural Units in PDB entry:
2XVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2XVS entry

There is 1 chain in PDB entry 2XVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLY 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2XVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
261 281Right-handed alpha
Helix 2
2
A
282 284Right-handed 310
Helix 3
3
A
285 295Right-handed alpha
Helix 4
4
A
297 305Right-handed 310
Helix 5
5
A
323 327Right-handed 310
Helix 6
6
A
412 415Right-handed 310
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There are 4 sheets in PDB entry 2XVS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
316 317anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
335 345parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
390 398anti-parallel
Strand 3
A
401 410anti-parallel
Strand 4
A
365 369parallel
Strand 5
A
353 358anti-parallel
Strand 6
A
335 345anti-parallel
Strand 7
A
383 387anti-parallel
Strand 8
A
417 418parallel
Strand 9
A
421 422parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
390 398anti-parallel
Strand 3
A
401 410anti-parallel
Strand 4
A
365 369parallel
Strand 5
A
353 358anti-parallel
Strand 6
A
335 345anti-parallel
Strand 7
A
320 321parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il