Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0B entry

There are 8 chains in PDB entry 2Y0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 34ALA 162
A
 ARG 164THR 174
B
 CYS 184HIS 277
C
 ASP 34ALA 162
C
 ARG 164THR 174
D
 HIS 185HIS 277
G
 ASP 13ILE 131
H
 ASP 13LEU 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2Y0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
136 142Right-handed alpha
Helix 5
5
A
148 152Right-handed 310
Helix 6
6
B
214 227Right-handed alpha
Helix 7
7
B
231 247Right-handed alpha
Helix 8
8
B
253 257Right-handed 310
Helix 9
9
C
56 60Right-handed 310
Helix 10
10
C
66 81Right-handed alpha
Helix 11
11
C
92 105Right-handed alpha
Helix 12
12
C
136 142Right-handed alpha
Helix 13
13
C
148 152Right-handed 310
Helix 14
14
D
214 227Right-handed alpha
Helix 15
15
D
231 247Right-handed alpha
Helix 16
16
D
253 257Right-handed 310
Helix 17
17
G
13 25Right-handed alpha
Helix 18
18
G
26 36Right-handed alpha
Helix 19
19
G
49 57Right-handed alpha
Helix 20
20
G
59 69Right-handed alpha
Helix 21
21
G
82 91Right-handed alpha
Helix 22
22
G
92 102Right-handed alpha
Helix 23
23
G
115 123Right-handed alpha
Helix 24
24
G
125 131Right-handed alpha
Helix 25
25
H
13 24Right-handed alpha
Helix 26
26
H
26 36Right-handed alpha
Helix 27
27
H
49 58Right-handed alpha
Helix 28
28
H
59 69Right-handed alpha
Helix 29
29
H
82 91Right-handed alpha
Helix 30
30
H
92 102Right-handed alpha
Helix 31
31
H
115 123Right-handed alpha
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There are 7 sheets in PDB entry 2Y0B. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, A,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
43 51parallel
Strand 3
A
111 119parallel
Strand 4
A
156 161parallel
Strand 5
B
193 197parallel
Strand 6
B
264 267anti-parallel
Strand 7
D
264 267anti-parallel
Strand 8
D
193 197anti-parallel
Strand 9
C
156 161parallel
Strand 10
C
111 119parallel
Strand 11
C
43 51parallel
Strand 12
C
84 89parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
132 135anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
D
186 187anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
C
172 173anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
212 213anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
126 129anti-parallel
Strand 3
C
132 135anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
207 208first strand
Strand 2
D
212 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il