Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0C entry

There are 3 chains in PDB entry 2Y0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ALA 459
B
 GLY -2VAL 458
C
 GLY -2VAL 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2Y0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
32 41Right-handed alpha
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
69 77Right-handed alpha
Helix 5
5
A
96 110Right-handed alpha
Helix 6
6
A
125 141Right-handed alpha
Helix 7
7
A
160 167Right-handed alpha
Helix 8
8
A
178 192Right-handed alpha
Helix 9
9
A
193 197Right-handed 310
Helix 10
10
A
206 238Right-handed alpha
Helix 11
11
A
241 251Right-handed alpha
Helix 12
12
A
270 285Right-handed alpha
Helix 13
13
A
289 303Right-handed alpha
Helix 14
14
A
304 315Right-handed alpha
Helix 15
15
A
340 352Right-handed alpha
Helix 16
16
A
363 375Right-handed alpha
Helix 17
17
A
378 383Right-handed alpha
Helix 18
18
A
390 395Right-handed alpha
Helix 19
19
A
407 412Right-handed 310
Helix 20
20
A
414 420Right-handed alpha
Helix 21
21
A
435 442Right-handed alpha
Helix 22
22
A
454 459Right-handed alpha
Helix 23
23
B
9 22Right-handed alpha
Helix 24
24
B
32 41Right-handed alpha
Helix 25
25
B
50 61Right-handed alpha
Helix 26
26
B
69 77Right-handed alpha
Helix 27
27
B
96 110Right-handed alpha
Helix 28
28
B
125 141Right-handed alpha
Helix 29
29
B
160 167Right-handed alpha
Helix 30
30
B
178 192Right-handed alpha
Helix 31
31
B
193 196Right-handed 310
Helix 32
32
B
206 239Right-handed alpha
Helix 33
33
B
241 251Right-handed alpha
Helix 34
34
B
270 285Right-handed alpha
Helix 35
35
B
289 303Right-handed alpha
Helix 36
36
B
304 315Right-handed alpha
Helix 37
37
B
340 352Right-handed alpha
Helix 38
38
B
363 375Right-handed alpha
Helix 39
39
B
378 383Right-handed 310
Helix 40
40
B
390 395Right-handed alpha
Helix 41
41
B
407 411Right-handed 310
Helix 42
42
B
414 420Right-handed alpha
Helix 43
43
B
435 442Right-handed alpha
Helix 44
44
B
454 458Right-handed 310
Helix 45
45
C
9 22Right-handed alpha
Helix 46
46
C
32 41Right-handed alpha
Helix 47
47
C
50 61Right-handed alpha
Helix 48
48
C
69 77Right-handed alpha
Helix 49
49
C
96 110Right-handed alpha
Helix 50
50
C
125 142Right-handed alpha
Helix 51
51
C
160 167Right-handed alpha
Helix 52
52
C
178 193Right-handed alpha
Helix 53
53
C
194 197Right-handed 310
Helix 54
54
C
206 239Right-handed alpha
Helix 55
55
C
241 251Right-handed alpha
Helix 56
56
C
270 285Right-handed alpha
Helix 57
57
C
289 303Right-handed alpha
Helix 58
58
C
304 315Right-handed alpha
Helix 59
59
C
340 352Right-handed alpha
Helix 60
60
C
363 375Right-handed alpha
Helix 61
61
C
378 384Right-handed alpha
Helix 62
62
C
391 396Right-handed 310
Helix 63
63
C
407 412Right-handed 310
Helix 64
64
C
414 420Right-handed alpha
Helix 65
65
C
435 442Right-handed alpha
Helix 66
66
D
9 22Right-handed alpha
Helix 67
67
D
32 41Right-handed alpha
Helix 68
68
D
50 61Right-handed alpha
Helix 69
69
D
69 77Right-handed alpha
Helix 70
70
D
96 110Right-handed alpha
Helix 71
71
D
125 142Right-handed alpha
Helix 72
72
D
160 167Right-handed alpha
Helix 73
73
D
178 193Right-handed alpha
Helix 74
74
D
194 196Right-handed 310
Helix 75
75
D
206 239Right-handed alpha
Helix 76
76
D
241 251Right-handed alpha
Helix 77
77
D
269 285Right-handed alpha
Helix 78
78
D
289 303Right-handed alpha
Helix 79
79
D
304 315Right-handed alpha
Helix 80
80
D
340 352Right-handed alpha
Helix 81
81
D
363 375Right-handed alpha
Helix 82
82
D
378 383Right-handed alpha
Helix 83
83
D
390 395Right-handed alpha
Helix 84
84
D
407 411Right-handed 310
Helix 85
85
D
414 420Right-handed alpha
Helix 86
86
D
435 442Right-handed alpha
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There are 12 sheets in PDB entry 2Y0C. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
79 82parallel
Strand 5
A
114 118parallel
Strand 6
A
147 151parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
202 205parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
355 359parallel
Strand 3
A
322 326parallel
Strand 4
A
400 403parallel
Strand 5
A
426 429parallel
Strand 6
A
445 447parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
79 82parallel
Strand 5
B
114 118parallel
Strand 6
B
147 151parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
202 205parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 387first strand
Strand 2
B
355 359parallel
Strand 3
B
322 326parallel
Strand 4
B
400 403parallel
Strand 5
B
426 429parallel
Strand 6
B
445 448parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 67first strand
Strand 2
C
25 29parallel
Strand 3
C
2 6parallel
Strand 4
C
79 82parallel
Strand 5
C
114 118parallel
Strand 6
C
147 151parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 174first strand
Strand 2
C
202 205parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 387first strand
Strand 2
C
355 359parallel
Strand 3
C
322 326parallel
Strand 4
C
400 403parallel
Strand 5
C
426 429parallel
Strand 6
C
445 447parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 67first strand
Strand 2
D
25 29parallel
Strand 3
D
2 6parallel
Strand 4
D
79 82parallel
Strand 5
D
114 118parallel
Strand 6
D
147 151parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 174first strand
Strand 2
D
202 205parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 387first strand
Strand 2
D
355 359parallel
Strand 3
D
322 326parallel
Strand 4
D
400 403parallel
Strand 5
D
426 429parallel
Strand 6
D
445 447parallel
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