Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0F entry

There are 4 chains in PDB entry 2Y0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4ALA 406
B
 MET 4ALA 406
C
 MET 4ALA 406
D
 MET 4ARG 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 2Y0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 51Right-handed alpha
Helix 2
2
A
61 77Right-handed alpha
Helix 3
3
A
91 99Right-handed alpha
Helix 4
4
A
99 106Right-handed alpha
Helix 5
5
A
123 137Right-handed alpha
Helix 6
6
A
145 149Right-handed 310
Helix 7
7
A
150 163Right-handed alpha
Helix 8
8
A
169 192Right-handed alpha
Helix 9
9
A
195 197Right-handed 310
Helix 10
10
A
207 222Right-handed alpha
Helix 11
11
A
235 253Right-handed alpha
Helix 12
12
A
272 285Right-handed alpha
Helix 13
13
A
306 330Right-handed alpha
Helix 14
14
A
332 335Right-handed 310
Helix 15
15
A
347 351Right-handed 310
Helix 16
16
A
385 402Right-handed alpha
Helix 17
17
B
36 49Right-handed alpha
Helix 18
18
B
61 78Right-handed alpha
Helix 19
19
B
92 99Right-handed alpha
Helix 20
20
B
99 106Right-handed alpha
Helix 21
21
B
124 137Right-handed alpha
Helix 22
22
B
145 149Right-handed 310
Helix 23
23
B
150 163Right-handed alpha
Helix 24
24
B
169 193Right-handed alpha
Helix 25
25
B
195 197Right-handed 310
Helix 26
26
B
207 222Right-handed alpha
Helix 27
27
B
236 253Right-handed alpha
Helix 28
28
B
272 285Right-handed alpha
Helix 29
29
B
306 330Right-handed alpha
Helix 30
30
B
332 335Right-handed 310
Helix 31
31
B
347 351Right-handed 310
Helix 32
32
B
385 402Right-handed alpha
Helix 33
33
C
36 51Right-handed alpha
Helix 34
34
C
61 76Right-handed alpha
Helix 35
35
C
91 99Right-handed alpha
Helix 36
36
C
99 106Right-handed alpha
Helix 37
37
C
125 137Right-handed alpha
Helix 38
38
C
150 164Right-handed alpha
Helix 39
39
C
169 193Right-handed alpha
Helix 40
40
C
195 197Right-handed 310
Helix 41
41
C
207 222Right-handed alpha
Helix 42
42
C
236 253Right-handed alpha
Helix 43
43
C
272 285Right-handed alpha
Helix 44
44
C
306 330Right-handed alpha
Helix 45
45
C
332 335Right-handed 310
Helix 46
46
C
348 352Right-handed 310
Helix 47
47
C
385 402Right-handed alpha
Helix 48
48
D
36 50Right-handed alpha
Helix 49
49
D
61 66Right-handed alpha
Helix 50
50
D
67 78Right-handed alpha
Helix 51
51
D
91 99Right-handed alpha
Helix 52
52
D
99 106Right-handed alpha
Helix 53
53
D
126 135Right-handed alpha
Helix 54
54
D
145 149Right-handed 310
Helix 55
55
D
150 164Right-handed alpha
Helix 56
56
D
169 194Right-handed alpha
Helix 57
57
D
195 197Right-handed 310
Helix 58
58
D
207 222Right-handed alpha
Helix 59
59
D
236 254Right-handed alpha
Helix 60
60
D
272 284Right-handed alpha
Helix 61
61
D
306 330Right-handed alpha
Helix 62
62
D
332 335Right-handed 310
Helix 63
63
D
347 352Right-handed 310
Helix 64
64
D
385 402Right-handed alpha
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There are 14 sheets in PDB entry 2Y0F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, CA, CB, CC, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
16 18anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
140 144parallel
Strand 3
A
108 111parallel
Strand 4
A
84 87parallel
Strand 5
A
54 58parallel
Strand 6
A
25 29parallel
Strand 7
A
258 261parallel
Strand 8
A
227 230parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
337 341parallel
Strand 3
A
356 359parallel
Strand 4
A
368 373anti-parallel
Strand 5
A
376 381anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
16 18anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 203first strand
Strand 2
B
140 144parallel
Strand 3
B
108 111parallel
Strand 4
B
84 87parallel
Strand 5
B
54 58parallel
Strand 6
B
25 29parallel
Strand 7
B
258 260parallel
Strand 8
B
227 229parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
263 264parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 296first strand
Strand 2
B
337 341parallel
Strand 3
B
356 359parallel
Strand 4
B
368 373anti-parallel
Strand 5
B
376 381anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
16 18anti-parallel
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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 203first strand
Strand 2
C
140 144parallel
Strand 3
C
109 111parallel
Strand 4
C
84 87parallel
Strand 5
C
54 58parallel
Strand 6
C
25 29parallel
Strand 7
C
258 260parallel
Strand 8
C
227 229parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
293 296first strand
Strand 2
C
337 341parallel
Strand 3
C
356 359parallel
Strand 4
C
368 372anti-parallel
Strand 5
C
376 381anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
16 18anti-parallel
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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
199 203first strand
Strand 2
D
140 144parallel
Strand 3
D
108 111parallel
Strand 4
D
84 88parallel
Strand 5
D
54 59parallel
Strand 6
D
25 29parallel
Strand 7
D
258 260parallel
Strand 8
D
227 229parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 234first strand
Strand 2
D
263 264parallel
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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
293 296first strand
Strand 2
D
337 341parallel
Strand 3
D
356 359parallel
Strand 4
D
368 372anti-parallel
Strand 5
D
376 381anti-parallel
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