Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0K entry

There is 1 chain in PDB entry 2Y0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3TRP 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 2Y0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 5Right-handed alpha
Helix 2
2
A
25 29Right-handed 310
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There are 2 sheets in PDB entry 2Y0K. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 19 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 21first strand
Strand 2
A
30 42anti-parallel
Strand 3
A
51 63anti-parallel
Strand 4
A
89 100anti-parallel
Strand 5
A
103 110anti-parallel
Strand 6
A
128 136anti-parallel
Strand 7
A
142 153anti-parallel
Strand 8
A
175 183anti-parallel
Strand 9
A
188 197anti-parallel
Strand 10
A
201 213anti-parallel
Strand 11
A
219 231anti-parallel
Strand 12
A
239 251anti-parallel
Strand 13
A
254 264anti-parallel
Strand 14
A
294 303anti-parallel
Strand 15
A
312 326anti-parallel
Strand 16
A
329 344anti-parallel
Strand 17
A
354 364anti-parallel
Strand 18
A
370 384anti-parallel
Strand 19
A
7 21anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
169 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il