Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0L entry

There is 1 chain in PDB entry 2Y0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12TRP 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 2Y0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
178 182Right-handed 310
Helix 2
2
A
322 325Right-handed 310
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There are 2 sheets in PDB entry 2Y0L. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 19 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 33first strand
Strand 2
A
42 52anti-parallel
Strand 3
A
62 78anti-parallel
Strand 4
A
98 111anti-parallel
Strand 5
A
114 121anti-parallel
Strand 6
A
139 147anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
191 198anti-parallel
Strand 9
A
204 213first strand
Strand 10
A
217 229first strand
Strand 11
A
234 246first strand
Strand 12
A
256 268first strand
Strand 13
A
271 281first strand
Strand 14
A
311 320first strand
Strand 15
A
329 339first strand
Strand 16
A
352 362first strand
Strand 17
A
372 382first strand
Strand 18
A
388 400first strand
Strand 19
A
21 33anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
292 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il