Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0M entry

There are 5 chains in PDB entry 2Y0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 177HIS 273
A
 THR 275ALA 315
A
 ILE 317ILE 415
A
 VAL 417LYS 449
B
 ASP 495LEU 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2Y0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
198 203Right-handed 310
Helix 2
2
A
219 228Right-handed alpha
Helix 3
3
A
256 269Right-handed alpha
Helix 4
4
A
321 324Right-handed 310
Helix 5
5
A
327 342Right-handed alpha
Helix 6
6
A
354 376Right-handed alpha
Helix 7
7
A
381 390Right-handed alpha
Helix 8
8
A
392 403Right-handed alpha
Helix 9
9
A
418 428Right-handed alpha
Helix 10
10
A
439 442Right-handed 310
Helix 11
11
B
501 535Right-handed alpha
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There are 3 sheets in PDB entry 2Y0M. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
181 184anti-parallel
Strand 3
A
206 209parallel
Strand 4
A
216 217anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 243first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
283 291anti-parallel
Strand 4
A
296 305anti-parallel
Strand 5
A
317 319anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
412 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il