Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0N entry

There are 8 chains in PDB entry 2Y0N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 171ALA 507
B
 THR 171ALA 507
C
 THR 171ALA 507
D
 THR 171ALA 507
E
 PRO 551LEU 594
F
 VAL 553TRP 593
G
 VAL 553GLU 590
H
 VAL 553GLU 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2Y0N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
177 193Right-handed alpha
Helix 2
2
A
205 223Right-handed alpha
Helix 3
3
A
250 273Right-handed alpha
Helix 4
4
A
275 277Right-handed 310
Helix 5
5
A
278 288Right-handed alpha
Helix 6
6
A
446 450Right-handed 310
Helix 7
7
A
452 470Right-handed alpha
Helix 8
8
A
473 494Right-handed alpha
Helix 9
9
A
494 499Right-handed alpha
Helix 10
10
A
500 502Right-handed 310
Helix 11
11
B
177 193Right-handed alpha
Helix 12
12
B
205 223Right-handed alpha
Helix 13
13
B
250 273Right-handed alpha
Helix 14
14
B
275 277Right-handed 310
Helix 15
15
B
278 288Right-handed alpha
Helix 16
16
B
446 450Right-handed 310
Helix 17
17
B
452 470Right-handed alpha
Helix 18
18
B
473 494Right-handed alpha
Helix 19
19
B
494 499Right-handed alpha
Helix 20
20
B
500 502Right-handed 310
Helix 21
21
C
177 193Right-handed alpha
Helix 22
22
C
205 223Right-handed alpha
Helix 23
23
C
250 273Right-handed alpha
Helix 24
24
C
275 277Right-handed 310
Helix 25
25
C
278 288Right-handed alpha
Helix 26
26
C
446 450Right-handed 310
Helix 27
27
C
452 470Right-handed alpha
Helix 28
28
C
473 494Right-handed alpha
Helix 29
29
C
494 499Right-handed alpha
Helix 30
30
C
500 502Right-handed 310
Helix 31
31
D
177 193Right-handed alpha
Helix 32
32
D
205 223Right-handed alpha
Helix 33
33
D
250 273Right-handed alpha
Helix 34
34
D
275 277Right-handed 310
Helix 35
35
D
278 288Right-handed alpha
Helix 36
36
D
446 450Right-handed 310
Helix 37
37
D
452 470Right-handed alpha
Helix 38
38
D
473 494Right-handed alpha
Helix 39
39
D
494 499Right-handed alpha
Helix 40
40
D
500 502Right-handed 310
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There are 8 sheets in PDB entry 2Y0N. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
504 505anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
504 505anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 198first strand
Strand 2
C
504 505anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
197 198first strand
Strand 2
D
504 505anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
575 576first strand
Strand 2
E
579 580anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
575 576first strand
Strand 2
F
579 580anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
575 576first strand
Strand 2
G
579 580anti-parallel
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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
575 576first strand
Strand 2
H
579 580anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il