Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y0R entry

There is 1 chain in PDB entry 2Y0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ASN 2GLU 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 2Y0R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
9 15Right-handed alpha
Helix 2
2
X
82 86Right-handed 310
Helix 3
3
X
91 94Right-handed 310
Helix 4
4
X
98 112Right-handed alpha
Helix 5
5
X
136 144Right-handed alpha
Helix 6
6
X
147 151Right-handed 310
Helix 7
7
X
154 169Right-handed alpha
Helix 8
8
X
186 200Right-handed alpha
Helix 9
9
X
210 227Right-handed alpha
Helix 10
10
X
265 270Right-handed alpha
Helix 11
11
X
278 288Right-handed alpha
Helix 12
12
X
289 296Right-handed alpha
Helix 13
13
X
322 334Right-handed alpha
Helix 14
14
X
337 356Right-handed alpha
Helix 15
15
X
373 383Right-handed alpha
Helix 16
16
X
385 392Right-handed alpha
Helix 17
17
X
410 442Right-handed alpha
Helix 18
18
X
465 493Right-handed alpha
Helix 19
19
X
510 519Right-handed alpha
Helix 20
20
X
524 534Right-handed alpha
Helix 21
21
X
539 552Right-handed alpha
Helix 22
22
X
583 588Right-handed alpha
Helix 23
23
X
593 601Right-handed alpha
Helix 24
24
X
614 619Right-handed alpha
Helix 25
25
X
629 646Right-handed alpha
Helix 26
26
X
668 674Right-handed alpha
Helix 27
27
X
674 680Right-handed alpha
Helix 28
28
X
682 687Right-handed alpha
Helix 29
29
X
688 691Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 2Y0R. Click on sheet of interest to get list of strands forming it: XA, XB, XC, XD, XE, XF, XG, XH, XI,

There are 2 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
36 37first strand
Strand 2
X
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
51 52first strand
Strand 2
X
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in XC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
59 60first strand
Strand 2
X
72 73anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in XD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
116 119first strand
Strand 2
X
122 126anti-parallel
Strand 3
X
648 656parallel
Strand 4
X
172 178parallel
Strand 5
X
448 454parallel
Strand 6
X
240 247anti-parallel
Strand 7
X
253 257anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in XE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
116 119first strand
Strand 2
X
122 126anti-parallel
Strand 3
X
648 656parallel
Strand 4
X
172 178parallel
Strand 5
X
448 454parallel
Strand 6
X
240 247anti-parallel
Strand 7
X
260 261parallel
Back to list of sheets
Back to top of page

There are 2 strands in XF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
253 257first strand
Strand 2
X
240 247anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in XG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
360 361first strand
Strand 2
X
367 368anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in XH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
397 398first strand
Strand 2
X
405 406anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in XI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
558 559first strand
Strand 2
X
567 571anti-parallel
Strand 3
X
576 580anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il