Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y1V entry

There are 3 chains in PDB entry 2Y1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 29GLY 632
B
GLY 29GLY 632
C
GLY 29GLU 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2Y1V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
49 57Right-handed alpha
Helix 2
2
A
145 148Right-handed 310
Helix 3
3
A
282 288Right-handed alpha
Helix 4
4
A
481 485Right-handed 310
Helix 5
5
A
486 509Right-handed alpha
Helix 6
6
A
516 538Right-handed alpha
Helix 7
7
B
48 59Right-handed alpha
Helix 8
8
B
145 148Right-handed 310
Helix 9
9
B
152 156Right-handed 310
Helix 10
10
B
264 266Right-handed 310
Helix 11
11
B
282 288Right-handed alpha
Helix 12
12
B
482 485Right-handed 310
Helix 13
13
B
486 510Right-handed alpha
Helix 14
14
B
516 538Right-handed alpha
Helix 15
15
C
49 57Right-handed alpha
Helix 16
16
C
145 148Right-handed 310
Helix 17
17
C
153 155Right-handed 310
Helix 18
18
C
264 266Right-handed 310
Helix 19
19
C
282 287Right-handed alpha
Helix 20
20
C
482 485Right-handed 310
Helix 21
21
C
488 509Right-handed alpha
Helix 22
22
C
516 538Right-handed alpha
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There are 40 sheets in PDB entry 2Y1V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 130first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
177 180parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 75first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
183 187parallel
Strand 4
A
157 162anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 121first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
137 143anti-parallel
Strand 4
A
166 170anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
89 91first strand
Strand 2
A
97 101anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
190 195first strand
Strand 2
A
219 228anti-parallel
Strand 3
A
296 306anti-parallel
Strand 4
A
255 258anti-parallel
Strand 5
A
261 262anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
190 195first strand
Strand 2
A
219 228anti-parallel
Strand 3
A
296 306anti-parallel
Strand 4
A
247 249anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
212 213first strand
Strand 2
A
443 445parallel
Strand 3
A
316 317anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 273first strand
Strand 2
A
276 281anti-parallel
Strand 3
A
236 242anti-parallel
Strand 4
A
320 325anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
389 392first strand
Strand 2
A
345 353anti-parallel
Strand 3
A
423 430parallel
Strand 4
A
412 415anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
377 383first strand
Strand 2
A
365 371anti-parallel
Strand 3
A
401 405anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
562 568first strand
Strand 2
A
447 454anti-parallel
Strand 3
A
619 622parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
555 556first strand
Strand 2
A
465 469anti-parallel
Strand 3
A
571 579anti-parallel
Strand 4
A
591 595anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
477 479first strand
Strand 2
A
542 544anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
127 130first strand
Strand 2
B
36 39anti-parallel
Strand 3
B
177 180parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
73 75first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
183 184parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 121first strand
Strand 2
B
80 85anti-parallel
Strand 3
B
137 144anti-parallel
Strand 4
B
166 170anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
89 91first strand
Strand 2
B
97 101anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
157 158first strand
Strand 2
B
186 187anti-parallel
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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 195first strand
Strand 2
B
219 228anti-parallel
Strand 3
B
296 306anti-parallel
Strand 4
B
255 258anti-parallel
Strand 5
B
261 262anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 195first strand
Strand 2
B
219 228anti-parallel
Strand 3
B
296 306anti-parallel
Strand 4
B
247 249anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
212 213first strand
Strand 2
B
444 445parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
268 273first strand
Strand 2
B
276 281anti-parallel
Strand 3
B
236 242anti-parallel
Strand 4
B
320 325anti-parallel
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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
389 392first strand
Strand 2
B
345 353anti-parallel
Strand 3
B
423 430parallel
Strand 4
B
412 415anti-parallel
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There are 3 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
377 383first strand
Strand 2
B
365 371anti-parallel
Strand 3
B
401 405anti-parallel
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There are 3 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
562 568first strand
Strand 2
B
447 454anti-parallel
Strand 3
B
619 622parallel
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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
555 556first strand
Strand 2
B
465 469anti-parallel
Strand 3
B
571 579anti-parallel
Strand 4
B
591 595anti-parallel
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There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
477 480first strand
Strand 2
B
541 544anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
127 130first strand
Strand 2
C
36 39anti-parallel
Strand 3
C
177 180parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
73 75first strand
Strand 2
C
42 44anti-parallel
Strand 3
C
183 187parallel
Strand 4
C
157 162anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 121first strand
Strand 2
C
80 84anti-parallel
Strand 3
C
137 143anti-parallel
Strand 4
C
166 170anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
89 91first strand
Strand 2
C
97 101anti-parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
190 195first strand
Strand 2
C
219 228anti-parallel
Strand 3
C
296 306anti-parallel
Strand 4
C
255 258anti-parallel
Strand 5
C
261 262anti-parallel
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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
190 195first strand
Strand 2
C
219 228anti-parallel
Strand 3
C
296 306anti-parallel
Strand 4
C
247 249anti-parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
212 213first strand
Strand 2
C
444 445parallel
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There are 4 strands in CH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
268 273first strand
Strand 2
C
276 281anti-parallel
Strand 3
C
236 242anti-parallel
Strand 4
C
320 325anti-parallel
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There are 4 strands in CI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
389 392first strand
Strand 2
C
345 352anti-parallel
Strand 3
C
423 429parallel
Strand 4
C
412 415anti-parallel
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There are 3 strands in CJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
377 383first strand
Strand 2
C
365 371anti-parallel
Strand 3
C
401 405anti-parallel
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There are 3 strands in CK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
562 568first strand
Strand 2
C
447 454anti-parallel
Strand 3
C
619 622parallel
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There are 4 strands in CL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
555 556first strand
Strand 2
C
465 469anti-parallel
Strand 3
C
571 579anti-parallel
Strand 4
C
591 595anti-parallel
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There are 2 strands in CM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
477 480first strand
Strand 2
C
541 544anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il