Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y24 entry

There is 1 chain in PDB entry 2Y24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 31LYS 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2Y24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 69Right-handed alpha
Helix 2
AA2
A
87 93Right-handed 310
Helix 3
AA3
A
94 104Right-handed alpha
Helix 4
AA4
A
116 120Right-handed 310
Helix 5
AA5
A
132 134Right-handed 310
Helix 6
AA6
A
135 153Right-handed alpha
Helix 7
AA7
A
178 190Right-handed alpha
Helix 8
AA8
A
191 193Right-handed 310
Helix 9
AA9
A
207 210Right-handed 310
Helix 10
AB1
A
211 216Right-handed alpha
Helix 11
AB2
A
217 222Right-handed alpha
Helix 12
AB3
A
239 245Right-handed alpha
Helix 13
AB4
A
264 281Right-handed alpha
Helix 14
AB5
A
305 316Right-handed alpha
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There are 2 sheets in PDB entry 2Y24. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 391first strand
Strand 2
A
372 378anti-parallel
Strand 3
A
406 412anti-parallel
Strand 4
A
347 353anti-parallel
Strand 5
A
335 341anti-parallel
Strand 6
A
323 327anti-parallel
Strand 7
A
32 43anti-parallel
Strand 8
A
359 366parallel
Strand 9
A
397 402anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
79 84parallel
Strand 3
A
107 112parallel
Strand 4
A
159 161parallel
Strand 5
A
197 203parallel
Strand 6
A
226 230parallel
Strand 7
A
248 254parallel
Strand 8
A
285 290parallel
Strand 9
A
46 50parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il