Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y35 entry

There are 2 chains in PDB entry 2Y35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1140
B
 T 1 T 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2Y35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 14Right-handed alpha
Helix 2
2
A
36 45Right-handed alpha
Helix 3
3
A
56 76Right-handed alpha
Helix 4
4
A
90 118Right-handed alpha
Helix 5
5
A
129 133Right-handed 310
Helix 6
6
A
136 157Right-handed alpha
Helix 7
7
A
158 161Right-handed 310
Helix 8
8
A
175 190Right-handed alpha
Helix 9
9
A
205 215Right-handed alpha
Helix 10
10
A
237 240Right-handed 310
Helix 11
11
A
248 259Right-handed alpha
Helix 12
12
A
260 263Right-handed 310
Helix 13
13
A
270 286Right-handed alpha
Helix 14
14
A
301 314Right-handed alpha
Helix 15
15
A
315 317Right-handed 310
Helix 16
16
A
328 351Right-handed alpha
Helix 17
17
A
402 424Right-handed alpha
Helix 18
18
A
428 452Right-handed alpha
Helix 19
19
A
468 472Right-handed 310
Helix 20
20
A
489 498Right-handed alpha
Helix 21
21
A
499 506Right-handed 310
Helix 22
22
A
507 509Right-handed 310
Helix 23
23
A
510 516Right-handed alpha
Helix 24
24
A
521 525Right-handed 310
Helix 25
25
A
538 542Right-handed 310
Helix 26
26
A
550 557Right-handed alpha
Helix 27
27
A
558 565Right-handed alpha
Helix 28
28
A
566 572Right-handed alpha
Helix 29
29
A
611 615Right-handed 310
Helix 30
30
A
680 689Right-handed alpha
Helix 31
31
A
724 744Right-handed alpha
Helix 32
32
A
788 790Right-handed 310
Helix 33
33
A
806 811Right-handed alpha
Helix 34
34
A
821 825Right-handed 310
Helix 35
35
A
855 868Right-handed alpha
Helix 36
36
A
872 879Right-handed alpha
Helix 37
37
A
882 891Right-handed alpha
Helix 38
38
A
939 953Right-handed alpha
Helix 39
39
A
953 963Right-handed alpha
Helix 40
40
A
983 995Right-handed alpha
Helix 41
41
A
996 999Right-handed 310
Helix 42
42
A
1011 1026Right-handed alpha
Helix 43
43
A
1038 1040Right-handed 310
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There are 14 sheets in PDB entry 2Y35. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
220 225anti-parallel
Strand 4
A
199 202parallel
Strand 5
A
31 35parallel
Strand 6
A
80 84parallel
Strand 7
A
164 168parallel
Strand 8
A
578 583anti-parallel
Strand 9
A
605 610anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
326 327anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 652first strand
Strand 2
A
667 672anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 695first strand
Strand 2
A
701 710anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 722first strand
Strand 2
A
713 716anti-parallel
Strand 3
A
701 710anti-parallel
Strand 4
A
752 758parallel
Strand 5
A
783 786parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 722first strand
Strand 2
A
713 716anti-parallel
Strand 3
A
701 710anti-parallel
Strand 4
A
692 695anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 767first strand
Strand 2
A
771 776anti-parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
843 847anti-parallel
Strand 3
A
828 834anti-parallel
Strand 4
A
816 819anti-parallel
Strand 5
A
1042 1043anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 871first strand
Strand 2
A
936 938anti-parallel
Strand 3
A
929 931anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 918first strand
Strand 2
A
923 925anti-parallel
Strand 3
A
1002 1004anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1086 1089first strand
Strand 2
A
1102 1110parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1132first strand
Strand 2
A
1102 1110anti-parallel
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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1136 1138first strand
Strand 2
A
1064 1067anti-parallel
Strand 3
A
1079 1082anti-parallel
Strand 4
A
1102 1110anti-parallel
Strand 5
A
1128 1132anti-parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1136 1138first strand
Strand 2
A
1064 1067anti-parallel
Strand 3
A
1079 1082anti-parallel
Strand 4
A
1102 1110anti-parallel
Strand 5
A
1086 1089parallel
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