Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y3P entry

There are 2 chains in PDB entry 2Y3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23THR 522
B
 ILE 13THR 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 2Y3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
42 55Right-handed alpha
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
83 92Right-handed alpha
Helix 5
5
A
128 135Right-handed alpha
Helix 6
6
A
164 170Right-handed alpha
Helix 7
7
A
186 200Right-handed alpha
Helix 8
8
A
204 212Right-handed alpha
Helix 9
9
A
226 236Right-handed alpha
Helix 10
10
A
269 283Right-handed alpha
Helix 11
11
A
312 322Right-handed alpha
Helix 12
12
A
346 389Right-handed alpha
Helix 13
13
A
389 400Right-handed alpha
Helix 14
14
A
402 413Right-handed alpha
Helix 15
15
A
420 425Right-handed alpha
Helix 16
16
A
451 461Right-handed alpha
Helix 17
17
A
463 467Right-handed 310
Helix 18
18
A
468 493Right-handed alpha
Helix 19
19
A
494 514Right-handed alpha
Helix 20
20
B
14 18Right-handed 310
Helix 21
21
B
23 34Right-handed alpha
Helix 22
22
B
42 56Right-handed alpha
Helix 23
23
B
66 77Right-handed alpha
Helix 24
24
B
83 94Right-handed alpha
Helix 25
25
B
128 135Right-handed alpha
Helix 26
26
B
164 170Right-handed alpha
Helix 27
27
B
186 199Right-handed alpha
Helix 28
28
B
204 210Right-handed alpha
Helix 29
29
B
226 236Right-handed alpha
Helix 30
30
B
269 283Right-handed alpha
Helix 31
31
B
312 324Right-handed alpha
Helix 32
32
B
346 389Right-handed alpha
Helix 33
33
B
389 400Right-handed alpha
Helix 34
34
B
402 413Right-handed alpha
Helix 35
35
B
419 425Right-handed alpha
Helix 36
36
B
451 460Right-handed alpha
Helix 37
37
B
463 466Right-handed 310
Helix 38
38
B
467 494Right-handed alpha
Helix 39
39
B
494 514Right-handed alpha
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There are 14 sheets in PDB entry 2Y3P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
103 106anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
154 156anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
181 182anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 333first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
222 223anti-parallel
Strand 4
A
520 521parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 250first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
303 307anti-parallel
Strand 4
A
289 294anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
341 344anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
447 449anti-parallel
Strand 3
A
442 443anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
124 127anti-parallel
Strand 3
B
103 106anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
154 156anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
178 182anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 333first strand
Strand 2
B
237 243anti-parallel
Strand 3
B
222 224anti-parallel
Strand 4
B
520 521parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 250first strand
Strand 2
B
257 263anti-parallel
Strand 3
B
303 307anti-parallel
Strand 4
B
289 294anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 338first strand
Strand 2
B
341 344anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 416first strand
Strand 2
B
447 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il