Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2Y59 entry

There are 3 chains in PDB entry 2Y59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	GLU 466
B	ARG 1	GLU 466
C	ARG 1	TYR 459

There are 69 helices in PDB entry 2Y59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	13	Right-handed alpha
Helix 2	2	A	15	19	Right-handed 310
Helix 3	3	A	47	49	Right-handed 310
Helix 4	4	A	50	63	Right-handed alpha
Helix 5	5	A	99	113	Right-handed alpha
Helix 6	6	A	139	143	Right-handed 310
Helix 7	7	A	146	149	Right-handed 310
Helix 8	8	A	184	188	Right-handed 310
Helix 9	9	A	240	256	Right-handed alpha
Helix 10	10	A	286	298	Right-handed alpha
Helix 11	11	A	299	316	Right-handed alpha
Helix 12	12	A	319	335	Right-handed alpha
Helix 13	13	A	356	370	Right-handed alpha
Helix 14	14	A	372	380	Right-handed alpha
Helix 15	15	A	387	392	Right-handed alpha
Helix 16	16	A	393	395	Right-handed 310
Helix 17	17	A	445	460	Right-handed alpha
Helix 18	18	B	1	14	Right-handed alpha
Helix 19	19	B	15	19	Right-handed 310
Helix 20	20	B	47	50	Right-handed 310
Helix 21	21	B	51	64	Right-handed alpha
Helix 22	22	B	99	112	Right-handed alpha
Helix 23	23	B	139	143	Right-handed 310
Helix 24	24	B	145	149	Right-handed 310
Helix 25	25	B	184	188	Right-handed 310
Helix 26	26	B	240	256	Right-handed alpha
Helix 27	27	B	286	298	Right-handed alpha
Helix 28	28	B	299	316	Right-handed alpha
Helix 29	29	B	319	334	Right-handed alpha
Helix 30	30	B	356	368	Right-handed alpha
Helix 31	31	B	369	371	Right-handed 310
Helix 32	32	B	372	379	Right-handed alpha
Helix 33	33	B	387	392	Right-handed alpha
Helix 34	34	B	393	395	Right-handed 310
Helix 35	35	B	445	460	Right-handed alpha
Helix 36	36	C	1	13	Right-handed alpha
Helix 37	37	C	15	19	Right-handed 310
Helix 38	38	C	47	50	Right-handed 310
Helix 39	39	C	51	64	Right-handed alpha
Helix 40	40	C	99	112	Right-handed alpha
Helix 41	41	C	139	143	Right-handed 310
Helix 42	42	C	146	149	Right-handed 310
Helix 43	43	C	184	188	Right-handed 310
Helix 44	44	C	240	256	Right-handed alpha
Helix 45	45	C	286	298	Right-handed alpha
Helix 46	46	C	299	316	Right-handed alpha
Helix 47	47	C	319	334	Right-handed alpha
Helix 48	48	C	356	368	Right-handed alpha
Helix 49	49	C	372	378	Right-handed alpha
Helix 50	50	C	387	392	Right-handed alpha
Helix 51	51	C	393	395	Right-handed 310
Helix 52	52	C	445	460	Right-handed alpha
Helix 53	53	D	3	13	Right-handed alpha
Helix 54	54	D	14	19	Right-handed 310
Helix 55	55	D	47	49	Right-handed 310
Helix 56	56	D	50	64	Right-handed alpha
Helix 57	57	D	99	113	Right-handed alpha
Helix 58	58	D	139	143	Right-handed 310
Helix 59	59	D	145	149	Right-handed 310
Helix 60	60	D	184	188	Right-handed 310
Helix 61	61	D	240	256	Right-handed alpha
Helix 62	62	D	287	298	Right-handed alpha
Helix 63	63	D	299	316	Right-handed alpha
Helix 64	64	D	319	334	Right-handed alpha
Helix 65	65	D	356	370	Right-handed alpha
Helix 66	66	D	372	378	Right-handed alpha
Helix 67	67	D	387	392	Right-handed alpha
Helix 68	68	D	393	395	Right-handed 310
Helix 69	69	D	445	460	Right-handed alpha

There are 32 sheets in PDB entry 2Y59. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, BH, BI, CA, CB, CC, CD, CE, CF, CG, CH, CI, A, DB, C, DD, DE, DF, G,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	A	431	438	anti-parallel
Strand 4	A	417	424	anti-parallel
Strand 5	A	408	414	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	122	125	parallel
Strand 3	A	88	92	parallel
Strand 4	A	70	75	anti-parallel
Strand 5	A	277	283	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	117	118	parallel
Strand 3	A	259	260	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	163	164	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	232	237	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	218	222	parallel
Strand 3	A	209	211	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	224	226	parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	431	438	anti-parallel
Strand 4	B	417	424	anti-parallel
Strand 5	B	413	414	parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	431	438	anti-parallel
Strand 4	B	417	424	anti-parallel
Strand 5	B	408	410	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	414	first strand
Strand 2	B	417	424	parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	122	125	parallel
Strand 3	B	88	92	parallel
Strand 4	B	70	75	anti-parallel
Strand 5	B	277	283	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	117	118	parallel
Strand 3	B	259	260	parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	163	164	anti-parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	166	172	anti-parallel
Strand 3	B	232	237	anti-parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	218	222	parallel
Strand 3	B	209	211	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	224	226	parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	22	29	anti-parallel
Strand 3	C	431	438	anti-parallel
Strand 4	C	417	424	anti-parallel
Strand 5	C	413	414	parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	22	29	anti-parallel
Strand 3	C	431	438	anti-parallel
Strand 4	C	417	424	anti-parallel
Strand 5	C	408	410	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	414	first strand
Strand 2	C	417	424	parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	122	125	parallel
Strand 3	C	88	92	parallel
Strand 4	C	70	75	anti-parallel
Strand 5	C	277	283	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	117	118	parallel
Strand 3	C	259	260	parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	163	164	anti-parallel

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There are 3 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	232	237	anti-parallel

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There are 3 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	218	222	parallel
Strand 3	C	209	211	anti-parallel

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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	224	226	parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	431	438	anti-parallel
Strand 4	D	417	424	anti-parallel
Strand 5	D	408	414	anti-parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	266	first strand
Strand 2	D	122	125	parallel
Strand 3	D	88	92	parallel
Strand 4	D	68	75	anti-parallel
Strand 5	D	277	286	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	117	118	parallel
Strand 3	D	259	260	parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	163	164	anti-parallel

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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	232	237	anti-parallel

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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	218	222	parallel
Strand 3	D	209	211	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	224	226	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2Y59

Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y59