Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y5E entry

There is 1 chain in PDB entry 2Y5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3CYS 885
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2Y5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 72Right-handed alpha
Helix 2
2
A
73 76Right-handed 310
Helix 3
3
A
88 93Right-handed alpha
Helix 4
4
A
116 125Right-handed alpha
Helix 5
5
A
183 185Right-handed 310
Helix 6
6
A
217 221Right-handed 310
Helix 7
7
A
230 234Right-handed 310
Helix 8
8
A
237 239Right-handed 310
Helix 9
9
A
240 245Right-handed alpha
Helix 10
10
A
250 254Right-handed 310
Helix 11
11
A
260 266Right-handed alpha
Helix 12
12
A
272 276Right-handed 310
Helix 13
13
A
278 284Right-handed 310
Helix 14
14
A
287 300Right-handed alpha
Helix 15
15
A
318 322Right-handed 310
Helix 16
16
A
326 331Right-handed alpha
Helix 17
17
A
338 348Right-handed alpha
Helix 18
18
A
349 351Right-handed 310
Helix 19
19
A
367 370Right-handed 310
Helix 20
20
A
376 391Right-handed alpha
Helix 21
21
A
416 421Right-handed alpha
Helix 22
22
A
447 465Right-handed alpha
Helix 23
23
A
474 478Right-handed 310
Helix 24
24
A
479 492Right-handed alpha
Helix 25
25
A
494 499Right-handed alpha
Helix 26
26
A
501 505Right-handed 310
Helix 27
27
A
514 521Right-handed 310
Helix 28
28
A
540 549Right-handed alpha
Helix 29
29
A
576 596Right-handed alpha
Helix 30
30
A
630 632Right-handed 310
Helix 31
31
A
645 654Right-handed alpha
Helix 32
32
A
659 676Right-handed alpha
Helix 33
33
A
686 690Right-handed 310
Helix 34
34
A
698 701Right-handed 310
Helix 35
35
A
702 707Right-handed alpha
Helix 36
36
A
724 729Right-handed alpha
Helix 37
37
A
731 741Right-handed alpha
Helix 38
38
A
742 745Right-handed 310
Helix 39
39
A
747 766Right-handed alpha
Helix 40
40
A
768 773Right-handed 310
Helix 41
41
A
775 782Right-handed alpha
Helix 42
42
A
837 840Right-handed 310
Helix 43
43
A
847 852Right-handed alpha
Helix 44
44
A
857 861Right-handed 310
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There are 10 sheets in PDB entry 2Y5E. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
111 115anti-parallel
Strand 5
A
9 13parallel
Strand 6
A
16 19anti-parallel
Strand 7
A
79 82anti-parallel
Strand 8
A
58 59anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
138 144anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
170 171anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
150 156anti-parallel
Strand 3
A
188 197anti-parallel
Strand 4
A
202 208anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
150 156anti-parallel
Strand 3
A
188 197anti-parallel
Strand 4
A
223 224anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 208first strand
Strand 2
A
188 197anti-parallel
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There are 9 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
303 306parallel
Strand 3
A
395 400parallel
Strand 4
A
469 472parallel
Strand 5
A
506 509parallel
Strand 6
A
537 539parallel
Strand 7
A
634 636parallel
Strand 8
A
680 684parallel
Strand 9
A
256 259parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
359 365anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 605first strand
Strand 2
A
611 613anti-parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 785first strand
Strand 2
A
796 802anti-parallel
Strand 3
A
818 826anti-parallel
Strand 4
A
876 883anti-parallel
Strand 5
A
845 846anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 835first strand
Strand 2
A
869 872anti-parallel
Strand 3
A
862 864anti-parallel
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