Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y5J entry

There is 1 chain in PDB entry 2Y5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ARG 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2Y5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 56Right-handed alpha
Helix 2
2
A
76 92Right-handed alpha
Helix 3
3
A
93 95Right-handed 310
Helix 4
4
A
104 114Right-handed alpha
Helix 5
5
A
129 135Right-handed alpha
Helix 6
6
A
162 180Right-handed alpha
Helix 7
7
A
184 186Right-handed 310
Helix 8
8
A
201 210Right-handed alpha
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
233 238Right-handed alpha
Helix 11
11
A
244 247Right-handed 310
Helix 12
12
A
248 262Right-handed alpha
Helix 13
13
A
271 290Right-handed alpha
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There are 3 sheets in PDB entry 2Y5J. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
140 144parallel
Strand 3
A
118 121parallel
Strand 4
A
98 101parallel
Strand 5
A
60 63parallel
Strand 6
A
22 26parallel
Strand 7
A
266 269parallel
Strand 8
A
227 228parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
154 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il