Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y5P entry

There are 4 chains in PDB entry 2Y5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 321THR 392
B
 MET 321THR 392
C
 ALA 320THR 392
D
 ALA 320GLU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2Y5P

There are 4 sheets in PDB entry 2Y5P. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 339first strand
Strand 2
A
322 329anti-parallel
Strand 3
A
382 390parallel
Strand 4
A
355 361anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
B
332 339anti-parallel
Strand 3
B
322 329anti-parallel
Strand 4
B
382 389parallel
Strand 5
B
356 361anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
332 339first strand
Strand 2
C
322 329anti-parallel
Strand 3
C
382 390parallel
Strand 4
C
355 361anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
351 352first strand
Strand 2
D
332 339anti-parallel
Strand 3
D
322 329anti-parallel
Strand 4
D
382 390parallel
Strand 5
D
355 363anti-parallel
Strand 6
D
366 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il