Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y5W entry

There are 2 chains in PDB entry 2Y5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10LYS 356
B
 GLU 10LYS 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2Y5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 29Right-handed alpha
Helix 2
2
A
64 73Right-handed alpha
Helix 3
3
A
73 82Right-handed alpha
Helix 4
4
A
97 103Right-handed alpha
Helix 5
5
A
113 128Right-handed alpha
Helix 6
6
A
182 196Right-handed alpha
Helix 7
7
A
203 211Right-handed alpha
Helix 8
8
A
262 277Right-handed alpha
Helix 9
9
A
284 288Right-handed 310
Helix 10
10
A
289 294Right-handed alpha
Helix 11
11
A
316 331Right-handed alpha
Helix 12
12
A
344 352Right-handed alpha
Helix 13
13
B
23 28Right-handed alpha
Helix 14
14
B
64 73Right-handed alpha
Helix 15
15
B
75 82Right-handed alpha
Helix 16
16
B
97 103Right-handed alpha
Helix 17
17
B
113 128Right-handed alpha
Helix 18
18
B
182 197Right-handed alpha
Helix 19
19
B
203 210Right-handed alpha
Helix 20
20
B
262 274Right-handed alpha
Helix 21
21
B
284 287Right-handed 310
Helix 22
22
B
288 294Right-handed alpha
Helix 23
23
B
316 332Right-handed alpha
Helix 24
24
B
344 351Right-handed alpha
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There are 13 sheets in PDB entry 2Y5W. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, BF, BG, BH,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
14 19parallel
Strand 3
A
303 310parallel
Strand 4
A
86 91parallel
Strand 5
A
229 238parallel
Strand 6
A
212 223anti-parallel
Strand 7
A
133 144anti-parallel
Strand 8
A
149 151anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
14 19parallel
Strand 3
A
303 310parallel
Strand 4
A
86 91parallel
Strand 5
A
229 238parallel
Strand 6
A
212 223anti-parallel
Strand 7
A
133 144anti-parallel
Strand 8
A
178 180anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
133 144anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
51 54anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
171 172anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
334 335anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
14 19parallel
Strand 3
B
303 310parallel
Strand 4
B
86 91parallel
Strand 5
B
229 238parallel
Strand 6
B
341 342anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
14 19parallel
Strand 3
B
303 310parallel
Strand 4
B
86 91parallel
Strand 5
B
229 238parallel
Strand 6
B
212 223anti-parallel
Strand 7
B
133 145anti-parallel
Strand 8
B
148 151anti-parallel
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There are 8 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
14 19parallel
Strand 3
B
303 310parallel
Strand 4
B
86 91parallel
Strand 5
B
229 238parallel
Strand 6
B
212 223anti-parallel
Strand 7
B
133 145anti-parallel
Strand 8
B
178 179anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
133 145anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
229 238anti-parallel
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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
51 54anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
170 173anti-parallel
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