Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y62 entry

There is 1 chain in PDB entry 2Y62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1002ARG 1250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2Y62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1017 1031Right-handed alpha
Helix 2
2
A
1044 1046Right-handed 310
Helix 3
3
A
1047 1055Right-handed alpha
Helix 4
4
A
1079 1087Right-handed alpha
Helix 5
5
A
1095 1102Right-handed alpha
Helix 6
6
A
1105 1119Right-handed alpha
Helix 7
7
A
1130 1136Right-handed alpha
Helix 8
8
A
1138 1152Right-handed alpha
Helix 9
9
A
1156 1160Right-handed 310
Helix 10
10
A
1168 1172Right-handed 310
Helix 11
11
A
1179 1198Right-handed alpha
Helix 12
12
A
1199 1206Right-handed alpha
Helix 13
13
A
1218 1224Right-handed alpha
Helix 14
14
A
1234 1240Right-handed 310
Helix 15
15
A
1241 1248Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2Y62.

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1011first strand
Strand 2
A
1038 1042parallel
Strand 3
A
1060 1064parallel
Strand 4
A
1090 1093parallel
Strand 5
A
1122 1127parallel
Strand 6
A
1162 1166parallel
Strand 7
A
1208 1211parallel
Strand 8
A
1230 1233parallel
Strand 9
A
1007 1011parallel
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