Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2Y65 entry

There are 7 chains in PDB entry 2Y65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 8	ARG 351
B	ALA 9	LYS 363
C	ILE 7	LYS 363
D	GLU 10	LEU 362
W	PRO 938	SER 948
X	PRO 938	GLN 950
Y	PRO 938	GLY 949

There are 49 helices in PDB entry 2Y65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	29	Right-handed alpha
Helix 2	2	A	64	73	Right-handed alpha
Helix 3	3	A	73	82	Right-handed alpha
Helix 4	4	A	97	103	Right-handed alpha
Helix 5	5	A	113	129	Right-handed alpha
Helix 6	6	A	182	198	Right-handed alpha
Helix 7	7	A	203	210	Right-handed alpha
Helix 8	8	A	262	278	Right-handed alpha
Helix 9	9	A	284	287	Right-handed 310
Helix 10	10	A	288	294	Right-handed alpha
Helix 11	11	A	295	298	Right-handed 310
Helix 12	12	A	316	331	Right-handed alpha
Helix 13	13	A	345	351	Right-handed alpha
Helix 14	14	B	23	29	Right-handed alpha
Helix 15	15	B	64	73	Right-handed alpha
Helix 16	16	B	73	82	Right-handed alpha
Helix 17	17	B	97	103	Right-handed alpha
Helix 18	18	B	113	128	Right-handed alpha
Helix 19	19	B	182	198	Right-handed alpha
Helix 20	20	B	203	209	Right-handed alpha
Helix 21	21	B	262	278	Right-handed alpha
Helix 22	22	B	284	287	Right-handed 310
Helix 23	23	B	288	294	Right-handed alpha
Helix 24	24	B	316	331	Right-handed alpha
Helix 25	25	B	344	361	Right-handed alpha
Helix 26	26	C	23	29	Right-handed alpha
Helix 27	27	C	64	73	Right-handed alpha
Helix 28	28	C	74	82	Right-handed alpha
Helix 29	29	C	97	103	Right-handed alpha
Helix 30	30	C	113	128	Right-handed alpha
Helix 31	31	C	182	198	Right-handed alpha
Helix 32	32	C	203	210	Right-handed alpha
Helix 33	33	C	262	278	Right-handed alpha
Helix 34	34	C	284	287	Right-handed 310
Helix 35	35	C	288	294	Right-handed alpha
Helix 36	36	C	316	331	Right-handed alpha
Helix 37	37	C	344	363	Right-handed alpha
Helix 38	38	D	23	30	Right-handed alpha
Helix 39	39	D	64	73	Right-handed alpha
Helix 40	40	D	73	81	Right-handed alpha
Helix 41	41	D	97	103	Right-handed alpha
Helix 42	42	D	113	129	Right-handed alpha
Helix 43	43	D	182	197	Right-handed alpha
Helix 44	44	D	203	211	Right-handed alpha
Helix 45	45	D	262	278	Right-handed alpha
Helix 46	46	D	284	287	Right-handed 310
Helix 47	47	D	288	294	Right-handed alpha
Helix 48	48	D	316	331	Right-handed alpha
Helix 49	49	D	344	362	Right-handed alpha

There are 19 sheets in PDB entry 2Y65. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	334	336	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	14	19	parallel
Strand 3	A	303	310	parallel
Strand 4	A	86	91	parallel
Strand 5	A	229	238	parallel
Strand 6	A	212	223	anti-parallel
Strand 7	A	133	145	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	229	238	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	45	48	anti-parallel
Strand 3	A	51	54	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	170	172	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	334	336	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	14	19	parallel
Strand 3	B	303	310	parallel
Strand 4	B	86	91	parallel
Strand 5	B	228	238	parallel
Strand 6	B	212	223	anti-parallel
Strand 7	B	133	145	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	228	238	parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	45	48	anti-parallel
Strand 3	B	51	54	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	170	173	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	334	336	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	14	19	parallel
Strand 3	C	303	310	parallel
Strand 4	C	86	91	parallel
Strand 5	C	229	238	parallel
Strand 6	C	212	223	anti-parallel
Strand 7	C	133	145	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	229	238	parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	45	48	anti-parallel
Strand 3	C	51	54	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	170	172	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	334	335	anti-parallel

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There are 13 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	14	19	parallel
Strand 3	D	303	310	parallel
Strand 4	D	86	91	parallel
Strand 5	D	229	238	parallel
Strand 6	D	158	160	first strand
Strand 7	D	148	151	anti-parallel
Strand 8	D	133	145	anti-parallel
Strand 9	D	178	179	anti-parallel
Strand 10	D	340	342	first strand
Strand 11	W	946	948	first strand
Strand 12	W	939	942	parallel
Strand 13	D	133	145	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	51	54	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	171	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2Y65

Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y65