Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y6P entry

There are 3 chains in PDB entry 2Y6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2LYS 232
B
 ARG 2LEU 234
C
 ARG 3LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 2Y6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 21Right-handed 310
Helix 2
2
A
29 39Right-handed alpha
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
72 82Right-handed alpha
Helix 5
5
A
100 114Right-handed alpha
Helix 6
6
A
125 130Right-handed 310
Helix 7
7
A
174 183Right-handed alpha
Helix 8
8
A
186 193Right-handed alpha
Helix 9
9
A
195 202Right-handed alpha
Helix 10
10
A
220 231Right-handed alpha
Helix 11
11
B
18 21Right-handed 310
Helix 12
12
B
29 39Right-handed alpha
Helix 13
13
B
50 58Right-handed alpha
Helix 14
14
B
72 82Right-handed alpha
Helix 15
15
B
100 113Right-handed alpha
Helix 16
16
B
174 183Right-handed alpha
Helix 17
17
B
186 193Right-handed alpha
Helix 18
18
B
195 202Right-handed alpha
Helix 19
19
B
220 232Right-handed alpha
Helix 20
20
C
18 21Right-handed 310
Helix 21
21
C
29 39Right-handed alpha
Helix 22
22
C
50 58Right-handed alpha
Helix 23
23
C
72 82Right-handed alpha
Helix 24
24
C
100 114Right-handed alpha
Helix 25
25
C
174 182Right-handed alpha
Helix 26
26
C
186 193Right-handed alpha
Helix 27
27
C
195 202Right-handed alpha
Helix 28
28
C
220 229Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 2Y6P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
44 48parallel
Strand 3
A
3 8parallel
Strand 4
A
88 91parallel
Strand 5
A
164 173anti-parallel
Strand 6
A
135 138anti-parallel
Strand 7
A
144 148anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
44 48parallel
Strand 3
A
3 8parallel
Strand 4
A
88 91parallel
Strand 5
A
164 173anti-parallel
Strand 6
A
117 123parallel
Strand 7
A
207 210parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
27 28anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
44 48parallel
Strand 3
B
3 8parallel
Strand 4
B
88 91parallel
Strand 5
B
164 173anti-parallel
Strand 6
B
117 123anti-parallel
Strand 7
B
207 210parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
27 28anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
144 148anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 65first strand
Strand 2
C
44 48parallel
Strand 3
C
4 8parallel
Strand 4
C
88 91parallel
Strand 5
C
164 173anti-parallel
Strand 6
C
117 123anti-parallel
Strand 7
C
206 210parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
27 28anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 138first strand
Strand 2
C
144 148anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il