Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y6U entry

There are 6 chains in PDB entry 2Y6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3THR 12
A
 SER 14LEU 25
A
 ALA 27THR 126
A
 GLU 128THR 204
A
 ASP 206TRP 297
A
 PRO 299LYS 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2Y6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 75Right-handed 310
Helix 2
2
A
97 104Right-handed alpha
Helix 3
3
A
113 129Right-handed alpha
Helix 4
4
A
145 158Right-handed alpha
Helix 5
5
A
193 203Right-handed alpha
Helix 6
6
A
210 221Right-handed alpha
Helix 7
7
A
228 239Right-handed alpha
Helix 8
8
A
258 265Right-handed alpha
Helix 9
9
A
268 271Right-handed 310
Helix 10
10
A
272 280Right-handed alpha
Helix 11
11
A
281 283Right-handed 310
Helix 12
12
A
299 310Right-handed alpha
Helix 13
13
A
324 329Right-handed alpha
Helix 14
14
A
329 348Right-handed alpha
Helix 15
15
A
359 379Right-handed alpha
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There are 2 sheets in PDB entry 2Y6U. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 14first strand
Strand 2
A
32 40anti-parallel
Strand 3
A
84 92anti-parallel
Strand 4
A
51 58parallel
Strand 5
A
137 144parallel
Strand 6
A
164 168parallel
Strand 7
A
286 292parallel
Strand 8
A
313 318parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
253 255anti-parallel
Strand 3
A
240 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il