Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y6V entry

There are 18 chains in PDB entry 2Y6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3THR 12
A
 SER 14LEU 25
A
 ALA 27THR 126
A
 GLU 128THR 204
A
 ASP 206TRP 297
A
 PRO 299LYS 381
B
 GLN 3THR 12
B
 SER 14LEU 25
B
 ALA 27THR 126
B
 GLU 128THR 204
B
 ASP 206TRP 297
B
 PRO 299LYS 381
C
 GLN 3THR 12
C
 SER 14LEU 25
C
 ALA 27THR 126
C
 GLU 128THR 204
C
 ASP 206TRP 297
C
 PRO 299LEU 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 2Y6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 75Right-handed 310
Helix 2
2
A
97 104Right-handed alpha
Helix 3
3
A
113 129Right-handed alpha
Helix 4
4
A
131 135Right-handed 310
Helix 5
5
A
145 158Right-handed alpha
Helix 6
6
A
194 203Right-handed alpha
Helix 7
7
A
210 221Right-handed alpha
Helix 8
8
A
228 239Right-handed alpha
Helix 9
9
A
258 265Right-handed alpha
Helix 10
10
A
268 271Right-handed 310
Helix 11
11
A
272 278Right-handed alpha
Helix 12
12
A
279 283Right-handed 310
Helix 13
13
A
299 310Right-handed alpha
Helix 14
14
A
324 329Right-handed alpha
Helix 15
15
A
329 348Right-handed alpha
Helix 16
16
A
359 378Right-handed alpha
Helix 17
17
B
64 75Right-handed 310
Helix 18
18
B
97 104Right-handed alpha
Helix 19
19
B
113 129Right-handed alpha
Helix 20
20
B
131 135Right-handed 310
Helix 21
21
B
145 158Right-handed alpha
Helix 22
22
B
194 203Right-handed alpha
Helix 23
23
B
210 221Right-handed alpha
Helix 24
24
B
228 239Right-handed alpha
Helix 25
25
B
258 265Right-handed alpha
Helix 26
26
B
268 271Right-handed 310
Helix 27
27
B
272 278Right-handed alpha
Helix 28
28
B
279 283Right-handed 310
Helix 29
29
B
299 310Right-handed alpha
Helix 30
30
B
324 329Right-handed alpha
Helix 31
31
B
329 348Right-handed alpha
Helix 32
32
B
359 378Right-handed alpha
Helix 33
33
C
64 75Right-handed 310
Helix 34
34
C
97 104Right-handed alpha
Helix 35
35
C
113 129Right-handed alpha
Helix 36
36
C
131 135Right-handed 310
Helix 37
37
C
145 158Right-handed alpha
Helix 38
38
C
193 203Right-handed alpha
Helix 39
39
C
210 221Right-handed alpha
Helix 40
40
C
228 240Right-handed alpha
Helix 41
41
C
258 265Right-handed alpha
Helix 42
42
C
268 271Right-handed 310
Helix 43
43
C
272 280Right-handed alpha
Helix 44
44
C
281 283Right-handed 310
Helix 45
45
C
299 310Right-handed alpha
Helix 46
46
C
324 329Right-handed alpha
Helix 47
47
C
329 346Right-handed alpha
Helix 48
48
C
359 379Right-handed alpha
Helix 49
49
C
382 387Right-handed alpha
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There are 8 sheets in PDB entry 2Y6V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, CA, CB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 14first strand
Strand 2
A
32 40anti-parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
52 58parallel
Strand 5
A
137 144parallel
Strand 6
A
164 168parallel
Strand 7
A
286 292parallel
Strand 8
A
313 318parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
B
379 380parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
253 255anti-parallel
Strand 3
A
240 241anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
B
192 193parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 14first strand
Strand 2
B
32 40anti-parallel
Strand 3
B
84 93anti-parallel
Strand 4
B
51 58parallel
Strand 5
B
137 144parallel
Strand 6
B
164 168parallel
Strand 7
B
286 292parallel
Strand 8
B
313 318parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
253 255anti-parallel
Strand 3
B
240 241anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 14first strand
Strand 2
C
32 40anti-parallel
Strand 3
C
84 92anti-parallel
Strand 4
C
51 58parallel
Strand 5
C
137 144parallel
Strand 6
C
164 168parallel
Strand 7
C
286 292parallel
Strand 8
C
313 318parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 208first strand
Strand 2
C
253 254anti-parallel
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